RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.36_1
         (29 letters)



>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
          Provisional.
          Length = 526

 Score = 32.7 bits (76), Expect = 0.022
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 2  VRIIGHYDGLAVRSTAKVT 20
          + IIG YD L VRS  KVT
Sbjct: 37 LEIIGDYDALIVRSATKVT 55


>gnl|CDD|162302 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase.  This model
          represents a long form of D-3-phosphoglycerate
          dehydrogenase, the serA gene of one pathway of serine
          biosynthesis. Shorter forms, scoring between trusted
          and noise cutoff, include SerA from E. coli.
          Length = 525

 Score = 28.8 bits (65), Expect = 0.32
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 1  MVRIIGHYDGLAVRSTAKVT 20
          ++ II  YD L VRS  KVT
Sbjct: 34 LLEIIPDYDALIVRSATKVT 53


>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
          Provisional.
          Length = 251

 Score = 25.2 bits (56), Expect = 3.6
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 1  MVRIIGHYDGL-AVRSTAKVTQSCCRM 26
          + RI GH  G+  V+   K+T++   +
Sbjct: 42 LPRIAGHKAGMDTVK---KITKAASEL 65


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 401,720
Number of extensions: 8127
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 3
Length of query: 29
Length of database: 5,994,473
Length adjustment: 4
Effective length of query: 25
Effective length of database: 5,908,041
Effective search space: 147701025
Effective search space used: 147701025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.1 bits)