Query 537021.9.peg.360_1 Match_columns 52 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 01:05:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_360.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cy7_A Cysteine protease APG4B 5.8 79 0.0033 15.0 -0.6 26 3-28 32-61 (396) 2 1szh_A HER-1 protein; extended 4.6 2.3E+02 0.0096 12.9 1.2 14 24-37 66-79 (161) 3 2kdp_A Histone deacetylase com 4.6 86 0.0036 14.9 -1.0 21 30-50 4-24 (71) 4 1m5i_A APC protein; coiled-coi 4.4 1.3E+02 0.0055 14.0 -0.2 12 18-29 29-40 (125) 5 3ech_C 25-MER fragent of prote 4.0 1.1E+02 0.0048 14.3 -0.8 11 33-43 15-25 (26) 6 2p82_A Cysteine protease ATG4A 3.0 1.7E+02 0.007 13.5 -0.7 26 3-28 28-57 (355) 7 2qv3_A VACA, vacuolating cytot 3.0 1.9E+02 0.0081 13.2 -0.4 27 4-30 204-232 (457) 8 1mhn_A SurviVal motor neuron p 2.4 2.9E+02 0.012 12.4 -0.1 42 6-50 3-46 (59) 9 2id1_A Hypothetical protein; a 2.3 2.9E+02 0.012 12.4 -0.2 10 10-19 83-92 (130) 10 1fy7_A ESA1 histone acetyltran 2.2 3.1E+02 0.013 12.2 -0.2 12 8-19 124-135 (278) No 1 >2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Probab=5.79 E-value=79 Score=15.04 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=15.9 Q ss_pred CCCCCCC----CEEHHEHHHHHHHHEEHHH Q ss_conf 1220147----4021031223012212112 Q 537021.9.peg.3 3 LGARFKS----GAVIVHFFSKVWFYYQLNL 28 (52) Q Consensus 3 lgarfks----gavivhffskvwfyyqlnl 28 (52) ||-+|+. .+..-.|.|+.||-|.-|. T Consensus 32 LG~~y~~~~~~~~f~~d~~S~iWfTYR~~F 61 (396) T 2cy7_A 32 LGRKYSIFTEKDEILSDVASRLWFTYRKNF 61 (396) T ss_dssp TTEEECTTTCHHHHHHHHHHSBCCCEEESC T ss_pred ECCCCCCCCCHHHHHHHHHHEEEEECCCCC T ss_conf 231004755699999986650998745898 No 2 >1szh_A HER-1 protein; extended 3-10 helix, LEFT-handed anti-parallel 4-helix bundle, overhand 3-helix bundle, signaling protein; 1.50A {Caenorhabditis elegans} SCOP: a.226.1.1 Probab=4.61 E-value=2.3e+02 Score=12.86 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=11.7 Q ss_pred EEHHHHHHHHHHHH Q ss_conf 12112744310210 Q 537021.9.peg.3 24 YQLNLIDELCCLVL 37 (52) Q Consensus 24 yqlnlidelcclvl 37 (52) -.+||-|..||-|. T Consensus 66 k~~NLdDsVCC~VF 79 (161) T 1szh_A 66 KKINLDDSVCCSVF 79 (161) T ss_dssp GCCCGGGGGGGGGG T ss_pred CCCCCCCCEEEHHC T ss_conf 23689865211001 No 3 >2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens} Probab=4.60 E-value=86 Score=14.86 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=15.5 Q ss_pred HHHHHHHHEEEEEEEEECCCC Q ss_conf 443102105027426605644 Q 537021.9.peg.3 30 DELCCLVLYGEKFFVSYGNAG 50 (52) Q Consensus 30 delcclvlygekffvsygnag 50 (52) +.+|||+--||.---.-|||. T Consensus 4 ~qiCCL~ddgeRC~r~AgnAs 24 (71) T 2kdp_A 4 GQLCCLREDGERCGRAAGNAS 24 (71) T ss_dssp SSBCCEEETTBCCCSBCCSCC T ss_pred CCEEEEEECCCHHCCCCCCCC T ss_conf 757899627303318668813 No 4 >1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1 Probab=4.38 E-value=1.3e+02 Score=13.98 Aligned_cols=12 Identities=42% Similarity=0.905 Sum_probs=9.4 Q ss_pred HHHHHHEEHHHH Q ss_conf 230122121127 Q 537021.9.peg.3 18 SKVWFYYQLNLI 29 (52) Q Consensus 18 skvwfyyqlnli 29 (52) .|.|+|-||+-. T Consensus 29 eK~wYyaQLq~L 40 (125) T 1m5i_A 29 EKDWYYAQLQNL 40 (125) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999989 No 5 >3ech_C 25-MER fragent of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} Probab=3.98 E-value=1.1e+02 Score=14.28 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=6.9 Q ss_pred HHHHHEEEEEE Q ss_conf 10210502742 Q 537021.9.peg.3 33 CCLVLYGEKFF 43 (52) Q Consensus 33 cclvlygekff 43 (52) -..-||||.|+ T Consensus 15 nawdlygehfy 25 (26) T 3ech_C 15 NAWDLYGEHFY 25 (26) T ss_dssp THHHHHHSCCC T ss_pred HHHHHHHHHCC T ss_conf 08987252314 No 6 >2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol protease, transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Probab=3.00 E-value=1.7e+02 Score=13.49 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=14.2 Q ss_pred CCCCCCC----CEEHHEHHHHHHHHEEHHH Q ss_conf 1220147----4021031223012212112 Q 537021.9.peg.3 3 LGARFKS----GAVIVHFFSKVWFYYQLNL 28 (52) Q Consensus 3 lgarfks----gavivhffskvwfyyqlnl 28 (52) ||-.|+. .+..-.|.|++||-|.-|. T Consensus 28 LG~~y~~~~~~~~fl~d~~S~iwfTYR~~F 57 (355) T 2p82_A 28 LGKQHLLKTEKSKLLSDISARLWFTYRRKF 57 (355) T ss_dssp TTEEEETTTTHHHHHHHHHTSBCCCEEESS T ss_pred ECEEECCCCCHHHHHHHHHHEEEEECCCCC T ss_conf 441424775699999976651897714798 No 7 >2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori} Probab=3.00 E-value=1.9e+02 Score=13.20 Aligned_cols=27 Identities=41% Similarity=0.831 Sum_probs=20.4 Q ss_pred CCCCCCCE--EHHEHHHHHHHHEEHHHHH Q ss_conf 22014740--2103122301221211274 Q 537021.9.peg.3 4 GARFKSGA--VIVHFFSKVWFYYQLNLID 30 (52) Q Consensus 4 garfksga--vivhffskvwfyyqlnlid 30 (52) |.+||||. ||-.|+-.-|-|+.-.-|. T Consensus 204 gvkFK~G~KlVIde~y~aPWNYFDARni~ 232 (457) T 2qv3_A 204 GVKFKSGEKLVIDEFYYSPWNYFDARNIK 232 (457) T ss_dssp CEEEEEEEEEEEEEEEECSSCEEEEEEEE T ss_pred CEEECCCCEEEECCCCCCCCHHCCCCCCC T ss_conf 50433675135523004872010224664 No 8 >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 Probab=2.41 E-value=2.9e+02 Score=12.37 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=19.7 Q ss_pred CCCCCEEHHEHHHH--HHHHEEHHHHHHHHHHHHEEEEEEEEECCCC Q ss_conf 01474021031223--0122121127443102105027426605644 Q 537021.9.peg.3 6 RFKSGAVIVHFFSK--VWFYYQLNLIDELCCLVLYGEKFFVSYGNAG 50 (52) Q Consensus 6 rfksgavivhffsk--vwfyyqlnlidelcclvlygekffvsygnag 50 (52) ++|-|....--||. -|.--...-|++-.. .-+-+|+.|||.. T Consensus 3 ~wkvG~~C~A~~~~D~~wYRA~I~~i~~~~~---~~~V~fvDYGn~e 46 (59) T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRE---TCVVVYTGYGNRE 46 (59) T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTT---EEEEEETTTTEEE T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCC---EEEEEEECCCCEE T ss_conf 6875999999998789898899999718899---9999996489989 No 9 >2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12 Probab=2.33 E-value=2.9e+02 Score=12.38 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=0.0 Q ss_pred CEEHHEHHHH Q ss_conf 4021031223 Q 537021.9.peg.3 10 GAVIVHFFSK 19 (52) Q Consensus 10 gavivhffsk 19 (52) |.++||.|++ T Consensus 83 gdivVHif~~ 92 (130) T 2id1_A 83 GDVVVHVMLP 92 (130) T ss_dssp TTEEEEEECH T ss_pred CCEEEECCCH T ss_conf 8489982898 No 10 >1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1mja_A* 1mjb_A* 1mj9_A* Probab=2.19 E-value=3.1e+02 Score=12.24 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=0.0 Q ss_pred CCCEEHHEHHHH Q ss_conf 474021031223 Q 537021.9.peg.3 8 KSGAVIVHFFSK 19 (52) Q Consensus 8 ksgavivhffsk 19 (52) ..|..+|-|||| T Consensus 124 ~~g~h~vGYFSK 135 (278) T 1fy7_A 124 ELGHHLVGYFSK 135 (278) T ss_dssp TTEEEEEEEEEE T ss_pred CCCCEEEEEEEE T ss_conf 998568888655 Done!