Query         537021.9.peg.360_1
Match_columns 52
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 18:33:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_360.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1xrsb2 d.230.4.1 (B:33-84) D-   6.6      83  0.0061   13.8   1.2   10   39-48     43-52  (52)
  2 d3e46a1 a.5.2.1 (A:157-198) Ub   5.0      50  0.0036   14.9  -0.8   18    5-22     16-33  (42)
  3 d1szha_ a.226.1.1 (A:) Her-1 {   4.5 1.4E+02  0.0099   12.8   1.2   14   24-37     63-76  (147)
  4 d2p82a1 d.3.1.22 (A:26-359) Cy   3.2      90  0.0065   13.6  -0.7   18   11-28     19-36  (334)
  5 d2ebfx2 c.150.1.2 (X:875-1093)   3.1 1.4E+02  0.0098   12.8   0.2   29   22-50    142-171 (219)
  6 d2id1a1 d.218.1.12 (A:1-120) H   3.0 1.2E+02  0.0088   13.0  -0.2   19    9-27     82-101 (120)
  7 d2z0da1 d.3.1.22 (A:5-354) Cys   2.7 1.1E+02  0.0082   13.2  -0.6   18   11-28     37-54  (350)
  8 d2o5aa1 d.218.1.12 (A:2-114) U   2.7 1.4E+02    0.01   12.7  -0.2   10   10-19     82-91  (113)
  9 d1mhna_ b.34.9.1 (A:) Survival   2.4 1.4E+02    0.01   12.7  -0.4    7   42-48     38-44  (59)
 10 d1rx0a2 e.6.1.1 (A:10-240) Iso   2.3 2.5E+02   0.018   11.5   1.3   13   36-48    153-165 (231)

No 1  
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=6.65  E-value=83  Score=13.80  Aligned_cols=10  Identities=60%  Similarity=0.999  Sum_probs=7.5

Q ss_pred             EEEEEEEECC
Q ss_conf             0274266056
Q 537021.9.peg.3   39 GEKFFVSYGN   48 (52)
Q Consensus        39 gekffvsygn   48 (52)
                      |-.|||-||+
T Consensus        43 gfTFFvvYG~   52 (52)
T d1xrsb2          43 EFTFFVVYGN   52 (52)
T ss_dssp             TEEEEEEEEC
T ss_pred             CCEEEEEECC
T ss_conf             9279998369


No 2  
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.01  E-value=50  Score=14.85  Aligned_cols=18  Identities=50%  Similarity=0.645  Sum_probs=14.7

Q ss_pred             CCCCCCEEHHEHHHHHHH
Q ss_conf             201474021031223012
Q 537021.9.peg.3    5 ARFKSGAVIVHFFSKVWF   22 (52)
Q Consensus         5 arfksgavivhffskvwf   22 (52)
                      +.|...|||+..-||-|-
T Consensus        16 ~gf~knavi~alsskswd   33 (42)
T d3e46a1          16 AGFDRNAVIVALSSKSWD   33 (42)
T ss_dssp             TTCCHHHHHHHHHHTTTC
T ss_pred             CCCCCCCEEEEECCCCCC
T ss_conf             135635166662257541


No 3  
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.50  E-value=1.4e+02  Score=12.80  Aligned_cols=14  Identities=43%  Similarity=0.933  Sum_probs=11.7

Q ss_pred             EEHHHHHHHHHHHH
Q ss_conf             12112744310210
Q 537021.9.peg.3   24 YQLNLIDELCCLVL   37 (52)
Q Consensus        24 yqlnlidelcclvl   37 (52)
                      -.+||-|..||-|.
T Consensus        63 k~~NLdDsVCC~VF   76 (147)
T d1szha_          63 KKINLDDSVCCSVF   76 (147)
T ss_dssp             GCCCGGGGGGGGGG
T ss_pred             CCCCCCCCEEEHHC
T ss_conf             23589765210001


No 4  
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19  E-value=90  Score=13.65  Aligned_cols=18  Identities=17%  Similarity=0.678  Sum_probs=11.1

Q ss_pred             EEHHEHHHHHHHHEEHHH
Q ss_conf             021031223012212112
Q 537021.9.peg.3   11 AVIVHFFSKVWFYYQLNL   28 (52)
Q Consensus        11 avivhffskvwfyyqlnl   28 (52)
                      +..-.|.|++||-|.-|.
T Consensus        19 ~~l~d~~s~iwfTYR~~F   36 (334)
T d2p82a1          19 KLLSDISARLWFTYRRKF   36 (334)
T ss_dssp             HHHHHHHTSBCCCEEESS
T ss_pred             HHHHHHHHHEEEECCCCC
T ss_conf             999874540897745898


No 5  
>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=3.12  E-value=1.4e+02  Score=12.81  Aligned_cols=29  Identities=34%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             HHEEHHHHHHHHH-HHHEEEEEEEEECCCC
Q ss_conf             2212112744310-2105027426605644
Q 537021.9.peg.3   22 FYYQLNLIDELCC-LVLYGEKFFVSYGNAG   50 (52)
Q Consensus        22 fyyqlnlidelcc-lvlygekffvsygnag   50 (52)
                      .+|.-|.+-|.-- |---||||.+-||++-
T Consensus       142 l~yr~nia~e~l~~L~~~geKfVa~~gsah  171 (219)
T d2ebfx2         142 LYYKGNIIAEAIEKLDREGQKFVVFADSSL  171 (219)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCCEEEEECHHH
T ss_pred             EEEHHHHHHHHHHHCCCCCCEEEEEECHHH
T ss_conf             432165899999848866775999965166


No 6  
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=3.03  E-value=1.2e+02  Score=13.04  Aligned_cols=19  Identities=37%  Similarity=0.698  Sum_probs=12.3

Q ss_pred             CCEEHHEHHHH-HHHHEEHH
Q ss_conf             74021031223-01221211
Q 537021.9.peg.3    9 SGAVIVHFFSK-VWFYYQLN   27 (52)
Q Consensus         9 sgavivhffsk-vwfyyqln   27 (52)
                      -|.++||.|++ .--||.|.
T Consensus        82 ~gdivVHif~~e~R~~Y~LE  101 (120)
T d2id1a1          82 AGDVVVHVMLPAVRDYYDIE  101 (120)
T ss_dssp             ETTEEEEEECHHHHHHHCHH
T ss_pred             CCCEEEEECCHHHHHHCCHH
T ss_conf             37369983798998774888


No 7  
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73  E-value=1.1e+02  Score=13.18  Aligned_cols=18  Identities=28%  Similarity=0.779  Sum_probs=10.9

Q ss_pred             EEHHEHHHHHHHHEEHHH
Q ss_conf             021031223012212112
Q 537021.9.peg.3   11 AVIVHFFSKVWFYYQLNL   28 (52)
Q Consensus        11 avivhffskvwfyyqlnl   28 (52)
                      +..-.|-|+.||-|.-|.
T Consensus        37 ~fl~d~~s~iwfTYR~~F   54 (350)
T d2z0da1          37 EILSDVASRLWFTYRKNF   54 (350)
T ss_dssp             HHHHHHHHSCCCCEEESC
T ss_pred             HHHHHHHHEEEEECCCCC
T ss_conf             999976643998835898


No 8  
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=2.69  E-value=1.4e+02  Score=12.74  Aligned_cols=10  Identities=60%  Similarity=1.075  Sum_probs=0.0

Q ss_pred             CEEHHEHHHH
Q ss_conf             4021031223
Q 537021.9.peg.3   10 GAVIVHFFSK   19 (52)
Q Consensus        10 gavivhffsk   19 (52)
                      |.++||.|++
T Consensus        82 gdvvVHif~~   91 (113)
T d2o5aa1          82 GDVVVHVFHK   91 (113)
T ss_dssp             SSEEEEEEET
T ss_pred             CCEEEECCCH
T ss_conf             9989985887


No 9  
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.41  E-value=1.4e+02  Score=12.72  Aligned_cols=7  Identities=43%  Similarity=1.132  Sum_probs=0.0

Q ss_pred             EEEEECC
Q ss_conf             4266056
Q 537021.9.peg.3   42 FFVSYGN   48 (52)
Q Consensus        42 ffvsygn   48 (52)
                      +|+.|||
T Consensus        38 ~fvDYGn   44 (59)
T d1mhna_          38 VYTGYGN   44 (59)
T ss_dssp             EETTTTE
T ss_pred             EEEECCC
T ss_conf             9980899


No 10 
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.32  E-value=2.5e+02  Score=11.52  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=0.0

Q ss_pred             HHEEEEEEEEECC
Q ss_conf             1050274266056
Q 537021.9.peg.3   36 VLYGEKFFVSYGN   48 (52)
Q Consensus        36 vlygekffvsygn   48 (52)
                      +|.|+|.|||.+.
T Consensus       153 ~LnG~K~~vs~~~  165 (231)
T d1rx0a2         153 ILNGSKAFISGAG  165 (231)
T ss_dssp             EEEEEEEEEETTT
T ss_pred             EEEEEECCCCCCC
T ss_conf             9986870416887


Done!