Query 537021.9.peg.360_1 Match_columns 52 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 18:33:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_360.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1xrsb2 d.230.4.1 (B:33-84) D- 6.6 83 0.0061 13.8 1.2 10 39-48 43-52 (52) 2 d3e46a1 a.5.2.1 (A:157-198) Ub 5.0 50 0.0036 14.9 -0.8 18 5-22 16-33 (42) 3 d1szha_ a.226.1.1 (A:) Her-1 { 4.5 1.4E+02 0.0099 12.8 1.2 14 24-37 63-76 (147) 4 d2p82a1 d.3.1.22 (A:26-359) Cy 3.2 90 0.0065 13.6 -0.7 18 11-28 19-36 (334) 5 d2ebfx2 c.150.1.2 (X:875-1093) 3.1 1.4E+02 0.0098 12.8 0.2 29 22-50 142-171 (219) 6 d2id1a1 d.218.1.12 (A:1-120) H 3.0 1.2E+02 0.0088 13.0 -0.2 19 9-27 82-101 (120) 7 d2z0da1 d.3.1.22 (A:5-354) Cys 2.7 1.1E+02 0.0082 13.2 -0.6 18 11-28 37-54 (350) 8 d2o5aa1 d.218.1.12 (A:2-114) U 2.7 1.4E+02 0.01 12.7 -0.2 10 10-19 82-91 (113) 9 d1mhna_ b.34.9.1 (A:) Survival 2.4 1.4E+02 0.01 12.7 -0.4 7 42-48 38-44 (59) 10 d1rx0a2 e.6.1.1 (A:10-240) Iso 2.3 2.5E+02 0.018 11.5 1.3 13 36-48 153-165 (231) No 1 >d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]} Probab=6.65 E-value=83 Score=13.80 Aligned_cols=10 Identities=60% Similarity=0.999 Sum_probs=7.5 Q ss_pred EEEEEEEECC Q ss_conf 0274266056 Q 537021.9.peg.3 39 GEKFFVSYGN 48 (52) Q Consensus 39 gekffvsygn 48 (52) |-.|||-||+ T Consensus 43 gfTFFvvYG~ 52 (52) T d1xrsb2 43 EFTFFVVYGN 52 (52) T ss_dssp TEEEEEEEEC T ss_pred CCEEEEEECC T ss_conf 9279998369 No 2 >d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=5.01 E-value=50 Score=14.85 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=14.7 Q ss_pred CCCCCCEEHHEHHHHHHH Q ss_conf 201474021031223012 Q 537021.9.peg.3 5 ARFKSGAVIVHFFSKVWF 22 (52) Q Consensus 5 arfksgavivhffskvwf 22 (52) +.|...|||+..-||-|- T Consensus 16 ~gf~knavi~alsskswd 33 (42) T d3e46a1 16 AGFDRNAVIVALSSKSWD 33 (42) T ss_dssp TTCCHHHHHHHHHHTTTC T ss_pred CCCCCCCEEEEECCCCCC T ss_conf 135635166662257541 No 3 >d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]} Probab=4.50 E-value=1.4e+02 Score=12.80 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=11.7 Q ss_pred EEHHHHHHHHHHHH Q ss_conf 12112744310210 Q 537021.9.peg.3 24 YQLNLIDELCCLVL 37 (52) Q Consensus 24 yqlnlidelcclvl 37 (52) -.+||-|..||-|. T Consensus 63 k~~NLdDsVCC~VF 76 (147) T d1szha_ 63 KKINLDDSVCCSVF 76 (147) T ss_dssp GCCCGGGGGGGGGG T ss_pred CCCCCCCCEEEHHC T ss_conf 23589765210001 No 4 >d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Probab=3.19 E-value=90 Score=13.65 Aligned_cols=18 Identities=17% Similarity=0.678 Sum_probs=11.1 Q ss_pred EEHHEHHHHHHHHEEHHH Q ss_conf 021031223012212112 Q 537021.9.peg.3 11 AVIVHFFSKVWFYYQLNL 28 (52) Q Consensus 11 avivhffskvwfyyqlnl 28 (52) +..-.|.|++||-|.-|. T Consensus 19 ~~l~d~~s~iwfTYR~~F 36 (334) T d2p82a1 19 KLLSDISARLWFTYRRKF 36 (334) T ss_dssp HHHHHHHTSBCCCEEESS T ss_pred HHHHHHHHHEEEECCCCC T ss_conf 999874540897745898 No 5 >d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]} Probab=3.12 E-value=1.4e+02 Score=12.81 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=21.0 Q ss_pred HHEEHHHHHHHHH-HHHEEEEEEEEECCCC Q ss_conf 2212112744310-2105027426605644 Q 537021.9.peg.3 22 FYYQLNLIDELCC-LVLYGEKFFVSYGNAG 50 (52) Q Consensus 22 fyyqlnlidelcc-lvlygekffvsygnag 50 (52) .+|.-|.+-|.-- |---||||.+-||++- T Consensus 142 l~yr~nia~e~l~~L~~~geKfVa~~gsah 171 (219) T d2ebfx2 142 LYYKGNIIAEAIEKLDREGQKFVVFADSSL 171 (219) T ss_dssp HHHHHHHHHHHHHHTSCTTCCEEEEECHHH T ss_pred EEEHHHHHHHHHHHCCCCCCEEEEEECHHH T ss_conf 432165899999848866775999965166 No 6 >d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]} Probab=3.03 E-value=1.2e+02 Score=13.04 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=12.3 Q ss_pred CCEEHHEHHHH-HHHHEEHH Q ss_conf 74021031223-01221211 Q 537021.9.peg.3 9 SGAVIVHFFSK-VWFYYQLN 27 (52) Q Consensus 9 sgavivhffsk-vwfyyqln 27 (52) -|.++||.|++ .--||.|. T Consensus 82 ~gdivVHif~~e~R~~Y~LE 101 (120) T d2id1a1 82 AGDVVVHVMLPAVRDYYDIE 101 (120) T ss_dssp ETTEEEEEECHHHHHHHCHH T ss_pred CCCEEEEECCHHHHHHCCHH T ss_conf 37369983798998774888 No 7 >d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Probab=2.73 E-value=1.1e+02 Score=13.18 Aligned_cols=18 Identities=28% Similarity=0.779 Sum_probs=10.9 Q ss_pred EEHHEHHHHHHHHEEHHH Q ss_conf 021031223012212112 Q 537021.9.peg.3 11 AVIVHFFSKVWFYYQLNL 28 (52) Q Consensus 11 avivhffskvwfyyqlnl 28 (52) +..-.|-|+.||-|.-|. T Consensus 37 ~fl~d~~s~iwfTYR~~F 54 (350) T d2z0da1 37 EILSDVASRLWFTYRKNF 54 (350) T ss_dssp HHHHHHHHSCCCCEEESC T ss_pred HHHHHHHHEEEEECCCCC T ss_conf 999976643998835898 No 8 >d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]} Probab=2.69 E-value=1.4e+02 Score=12.74 Aligned_cols=10 Identities=60% Similarity=1.075 Sum_probs=0.0 Q ss_pred CEEHHEHHHH Q ss_conf 4021031223 Q 537021.9.peg.3 10 GAVIVHFFSK 19 (52) Q Consensus 10 gavivhffsk 19 (52) |.++||.|++ T Consensus 82 gdvvVHif~~ 91 (113) T d2o5aa1 82 GDVVVHVFHK 91 (113) T ss_dssp SSEEEEEEET T ss_pred CCEEEECCCH T ss_conf 9989985887 No 9 >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Probab=2.41 E-value=1.4e+02 Score=12.72 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=0.0 Q ss_pred EEEEECC Q ss_conf 4266056 Q 537021.9.peg.3 42 FFVSYGN 48 (52) Q Consensus 42 ffvsygn 48 (52) +|+.||| T Consensus 38 ~fvDYGn 44 (59) T d1mhna_ 38 VYTGYGN 44 (59) T ss_dssp EETTTTE T ss_pred EEEECCC T ss_conf 9980899 No 10 >d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Probab=2.32 E-value=2.5e+02 Score=11.52 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=0.0 Q ss_pred HHEEEEEEEEECC Q ss_conf 1050274266056 Q 537021.9.peg.3 36 VLYGEKFFVSYGN 48 (52) Q Consensus 36 vlygekffvsygn 48 (52) +|.|+|.|||.+. T Consensus 153 ~LnG~K~~vs~~~ 165 (231) T d1rx0a2 153 ILNGSKAFISGAG 165 (231) T ss_dssp EEEEEEEEEETTT T ss_pred EEEEEECCCCCCC T ss_conf 9986870416887 Done!