BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.360_1
         (52 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.360_1 
          Length = 52

 Score =  105 bits (263), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/52 (100%), Positives = 52/52 (100%)

Query: 1  LYLGARFKSGAVIVHFFSKVWFYYQLNLIDELCCLVLYGEKFFVSYGNAGAI 52
          LYLGARFKSGAVIVHFFSKVWFYYQLNLIDELCCLVLYGEKFFVSYGNAGAI
Sbjct: 1  LYLGARFKSGAVIVHFFSKVWFYYQLNLIDELCCLVLYGEKFFVSYGNAGAI 52


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 606

 Score = 19.6 bits (39), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 4  GARFKSGAVIVHFFSKVWFYYQLNLID 30
          G   K+  V +++ S     YQLNLID
Sbjct: 58 GITIKAQTVRLNYTSTDAKDYQLNLID 84


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.150    0.493 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,951
Number of Sequences: 1233
Number of extensions: 1052
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 52
length of database: 328,796
effective HSP length: 25
effective length of query: 27
effective length of database: 297,971
effective search space:  8045217
effective search space used:  8045217
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 31 (16.5 bits)