RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.363_1
         (79 letters)



>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
           Validated.
          Length = 502

 Score = 27.4 bits (61), Expect = 0.80
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 10  SNLSPTST--TTVSFSRPT---TIPLVTQFSARSFLVKL-SSR--RVAKSSRDGLVKDIN 61
           SNL+P +T    +     T   T+ +    +A   L+ + +SR  R+++ S D  VKD  
Sbjct: 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFM 167

Query: 62  TP 63
           TP
Sbjct: 168 TP 169


>gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit;
           Provisional.
          Length = 482

 Score = 27.6 bits (62), Expect = 0.83
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 20  VSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI 60
           V+ ++       T++   S+   LS  +  + +RD + K I
Sbjct: 315 VALAKEKKKRGFTRYQPPSYWRLLSKTKEKRETRDSIAKKI 355


>gnl|CDD|179752 PRK04151, PRK04151, IMP cyclohydrolase; Provisional.
          Length = 197

 Score = 27.2 bits (61), Expect = 1.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 35 SARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTKNP 71
          S+RSF       R A   RD  V  +   D ++TKNP
Sbjct: 24 SSRSF-----PNRRAVV-RDNTVAIVPKDDAEETKNP 54


>gnl|CDD|185657 PTZ00479, PTZ00479, RAP Superfamily; Provisional.
          Length = 435

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 35  SARSFLVKLSSRRVAKSSR 53
           S +SF  +LS RR+ +S R
Sbjct: 272 SVKSFYTRLSMRRIPQSLR 290


>gnl|CDD|177475 PHA02693, PHA02693, hypothetical protein; Provisional.
          Length = 710

 Score = 24.6 bits (53), Expect = 5.2
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 1   MNSLRGIRPSNLSPTSTTT-------VSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSR 53
             S R  R +     + TT          S     PL  +F+A SF  + S R  + S R
Sbjct: 288 TRSTRSTRSTRSGAETDTTDPDLDPDDDESFDEVGPLTRRFTATSFAPRASVRSSSASMR 347


>gnl|CDD|179788 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
          Length = 601

 Score = 24.4 bits (54), Expect = 7.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 24  RPTTIPLVTQ 33
           R  T+PLVT+
Sbjct: 415 RSDTVPLVTE 424


>gnl|CDD|178173 PLN02559, PLN02559, chalcone--flavonone isomerase.
          Length = 230

 Score = 24.4 bits (53), Expect = 7.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 12  LSPTSTTTVSFSRPTTIP 29
            SPT + TV+FS+ +++P
Sbjct: 153 HSPTGSLTVAFSKDSSVP 170


>gnl|CDD|178083 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
          Length = 627

 Score = 24.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 1   MNSLRGIRPSNLSPTSTTTVSFSR 24
           +++  GIRP  + P++ +T S SR
Sbjct: 395 LSAWSGIRPLAVDPSAKSTESISR 418


>gnl|CDD|185460 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
           Provisional.
          Length = 236

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 2   NSLRGIRP--SNLSPTSTTTVSFSRPTTIPLVTQFSAR 37
           NSLR +      +S      +  + PT +PLV +    
Sbjct: 171 NSLRALVKYLDKMSEEDI--LELNIPTGVPLVYELDEN 206


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,142,368
Number of extensions: 50773
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 22
Length of query: 79
Length of database: 5,994,473
Length adjustment: 49
Effective length of query: 30
Effective length of database: 4,935,681
Effective search space: 148070430
Effective search space used: 148070430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)