BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.363_1
         (79 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.363_1 
          Length = 79

 Score =  151 bits (382), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI 60
          MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI
Sbjct: 1  MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI 60

Query: 61 NTPDKQQTKNPITSSVPII 79
          NTPDKQQTKNPITSSVPII
Sbjct: 61 NTPDKQQTKNPITSSVPII 79


>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 263

 Score = 24.3 bits (51), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 54  DGLVKDINTPDKQQTKNPITSSVPII 79
           DG + D++ P+  Q  + +   VPI+
Sbjct: 78  DGFIDDVHQPNAMQELDGVLVRVPIL 103


>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 23.5 bits (49), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 35 SARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTK 69
          S R    K+ +R    SSRD L + IN P  Q+ +
Sbjct: 9  SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQ 43


>gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 412

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 47  RVAKSSRDGLVKDINTPDKQ 66
           +++ + RD L K+++  DKQ
Sbjct: 393 KISDNLRDALQKNLSISDKQ 412


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.125    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,012
Number of Sequences: 1233
Number of extensions: 1099
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 328,796
effective HSP length: 49
effective length of query: 30
effective length of database: 268,379
effective search space:  8051370
effective search space used:  8051370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 31 (16.5 bits)