BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.363_1 (79 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.363_1 Length = 79 Score = 151 bits (382), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%) Query: 1 MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI 60 MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI Sbjct: 1 MNSLRGIRPSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDI 60 Query: 61 NTPDKQQTKNPITSSVPII 79 NTPDKQQTKNPITSSVPII Sbjct: 61 NTPDKQQTKNPITSSVPII 79 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 24.3 bits (51), Expect = 0.42, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 54 DGLVKDINTPDKQQTKNPITSSVPII 79 DG + D++ P+ Q + + VPI+ Sbjct: 78 DGFIDDVHQPNAMQELDGVLVRVPIL 103 >gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 23.5 bits (49), Expect = 0.78, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 35 SARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTK 69 S R K+ +R SSRD L + IN P Q+ + Sbjct: 9 SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQ 43 >gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 14/20 (70%) Query: 47 RVAKSSRDGLVKDINTPDKQ 66 +++ + RD L K+++ DKQ Sbjct: 393 KISDNLRDALQKNLSISDKQ 412 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.313 0.125 0.335 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,012 Number of Sequences: 1233 Number of extensions: 1099 Number of successful extensions: 6 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of query: 79 length of database: 328,796 effective HSP length: 49 effective length of query: 30 effective length of database: 268,379 effective search space: 8051370 effective search space used: 8051370 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.6 bits) S2: 31 (16.5 bits)