Query 537021.9.peg.374_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 19:06:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_374.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3dpu_A RAB family protein; ro 27.4 28 0.00083 17.7 1.4 22 18-39 100-121 (125) 2 >1gwm_A NCP1, non-catalytic pr 19.1 19 0.00056 18.5 -0.8 10 26-35 122-131 (153) 3 >1wcu_A CBM29_1, non-catalytic 18.7 19 0.00057 18.5 -0.8 11 26-36 126-136 (153) 4 >1mhy_G Methane monooxygenase 10.3 37 0.0011 17.1 -1.4 12 17-28 37-48 (65) 5 >1mty_G Methane monooxygenase 10.2 37 0.0011 17.1 -1.4 12 17-28 45-56 (73) 6 >1p1j_A Inositol-3-phosphate s 9.4 58 0.0017 16.1 -0.6 11 32-42 33-43 (44) 7 >2zkr_e 60S ribosomal protein 7.6 84 0.0025 15.3 -0.4 17 16-32 80-96 (106) 8 >1t98_A KICB protein, chromoso 7.4 1.5E+02 0.0044 14.1 0.7 13 28-40 33-45 (170) 9 >2po4_A Virion RNA polymerase; 7.1 1.3E+02 0.0039 14.4 0.4 14 23-36 12-25 (53) 10 >3euh_A Protein KICB, chromoso 7.0 1.5E+02 0.0045 14.0 0.7 13 28-40 33-45 (175) No 1 >>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:1-36,A:214-302) Probab=27.39 E-value=28 Score=17.68 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.9 Q ss_pred HHHCCCEEECHHHHHHHHHHHH Q ss_conf 1013633433110134444457 Q 537021.9.peg.3 18 PMMDCNVFLDPIWIKNIFVPLK 39 (42) Q Consensus 18 pmmdcnvfldpiwiknifvplk 39 (42) +.++--|||||-|.-++|-.+- T Consensus 100 ~~L~d~VvLdPqWL~~vl~~Ii 121 (125) T 3dpu_A 100 LDLSEIYVLDPHWVTIGVYRII 121 (125) T ss_dssp TCCSSSCEECHHHHHHHHHHHH T ss_pred CCCCCEEEECHHHHHHHHHHHH T ss_conf 6548759978589999999884 No 2 >>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} (A:) Probab=19.11 E-value=19 Score=18.53 Aligned_cols=10 Identities=60% Similarity=1.049 Sum_probs=7.5 Q ss_pred ECHHHHHHHH Q ss_conf 3311013444 Q 537021.9.peg.3 26 LDPIWIKNIF 35 (42) Q Consensus 26 ldpiwiknif 35 (42) -+|||||||. T Consensus 122 ~~~I~~r~ii 131 (153) T 1gwm_A 122 GDRIWIKNLV 131 (153) T ss_dssp CCCEEEEEEE T ss_pred CCEEEEEEHH T ss_conf 7788152101 No 3 >>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi} (A:) Probab=18.71 E-value=19 Score=18.46 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=8.3 Q ss_pred ECHHHHHHHHH Q ss_conf 33110134444 Q 537021.9.peg.3 26 LDPIWIKNIFV 36 (42) Q Consensus 26 ldpiwiknifv 36 (42) -+|||||||.- T Consensus 126 ~~~I~~r~ii~ 136 (153) T 1wcu_A 126 NIPIYMRYIIY 136 (153) T ss_dssp CCCEEEEEEEE T ss_pred CCEEEEEEEEE T ss_conf 98588888876 No 4 >>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (G:85-149) Probab=10.27 E-value=37 Score=17.08 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=9.0 Q ss_pred HHHHCCCEEECH Q ss_conf 110136334331 Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42) Q Consensus 17 lpmmdcnvfldp 28 (42) -|||-.|+|++- T Consensus 37 PPvmPvN~F~~t 48 (65) T 1mhy_G 37 PPVLPVNVFLRT 48 (65) T ss_dssp TTTSCHHHHHHH T ss_pred CCCCCCCCCCHH T ss_conf 987760101321 No 5 >>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (G:73-145) Probab=10.19 E-value=37 Score=17.06 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.0 Q ss_pred HHHHCCCEEECH Q ss_conf 110136334331 Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42) Q Consensus 17 lpmmdcnvfldp 28 (42) -|||-.|+|++- T Consensus 45 PPvmPvN~F~~t 56 (73) T 1mty_G 45 PPIMPVNYFLDG 56 (73) T ss_dssp TTTSCHHHHHHH T ss_pred CCCCCCHHCCHH T ss_conf 987760211322 No 6 >>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} (A:92-135) Probab=9.45 E-value=58 Score=16.12 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=8.3 Q ss_pred HHHHHHHHHCC Q ss_conf 34444457309 Q 537021.9.peg.3 32 KNIFVPLKSIL 42 (42) Q Consensus 32 knifvplksil 42 (42) +.+|+|+|++| T Consensus 33 ~ev~vPf~~lL 43 (44) T 1p1j_A 33 NDVYAPFNSLL 43 (44) T ss_dssp CEEEEEGGGSS T ss_pred CCCCCCHHHCC T ss_conf 72466377617 No 7 >>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:87-192) Probab=7.62 E-value=84 Score=15.32 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.8 Q ss_pred HHHHHCCCEEECHHHHH Q ss_conf 11101363343311013 Q 537021.9.peg.3 16 LLPMMDCNVFLDPIWIK 32 (42) Q Consensus 16 llpmmdcnvfldpiwik 32 (42) ....-|..+|||-||+- T Consensus 80 ~vk~kD~R~FlDGIYv~ 96 (106) T 2zkr_e 80 TVKNKDIRKFLDGIYVS 96 (106) T ss_dssp CCSSSCTTTCCCEEEEE T ss_pred CCCCCCCCEEECCEEEE T ss_conf 51799842600677999 No 8 >>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} (A:118-287) Probab=7.35 E-value=1.5e+02 Score=14.12 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1101344444573 Q 537021.9.peg.3 28 PIWIKNIFVPLKS 40 (42) Q Consensus 28 piwiknifvplks 40 (42) --|-+|.|.|||- T Consensus 33 ~~Wr~nV~apLky 45 (170) T 1t98_A 33 FHWHRNVYAPLKY 45 (170) T ss_dssp HHHHHHTHHHHHH T ss_pred HHHHHHHHHCCCC T ss_conf 9999875840634 No 9 >>2po4_A Virion RNA polymerase; right hand shape, transferase; 2.00A {Enterobacteria phage N4} PDB: 3c2p_A 3c3l_A 3c46_A (A:563-587,A:1077-1104) Probab=7.09 E-value=1.3e+02 Score=14.38 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=9.8 Q ss_pred CEEECHHHHHHHHH Q ss_conf 33433110134444 Q 537021.9.peg.3 23 NVFLDPIWIKNIFV 36 (42) Q Consensus 23 nvfldpiwiknifv 36 (42) .-...|-||.||-- T Consensus 12 gglftpdwirniak 25 (53) T 2po4_A 12 GGLFTPDWIRNIAK 25 (53) T ss_dssp CSCCCHHHHHHHHT T ss_pred CCCCCHHHHHHHHH T ss_conf 78678788733443 No 10 >>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (A:118-292) Probab=6.97 E-value=1.5e+02 Score=14.04 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1101344444573 Q 537021.9.peg.3 28 PIWIKNIFVPLKS 40 (42) Q Consensus 28 piwiknifvplks 40 (42) --|-+|.|.|||- T Consensus 33 ~~Wr~nV~apLky 45 (175) T 3euh_A 33 FHWHRNVYAPLKY 45 (175) T ss_dssp HHHHHTTHHHHHH T ss_pred HHHHHHHHHCCCC T ss_conf 9999875731744 Done!