Query 537021.9.peg.374_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 22:13:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_374.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1wcu_A CBM29_1, non-catalytic 19.2 13 0.00055 18.5 -0.8 12 25-36 125-136 (153) 2 1gwm_A NCP1, non-catalytic pro 19.1 13 0.00056 18.5 -0.8 10 26-35 122-131 (153) 3 1hc8_A Ribosomal protein L11; 9.0 50 0.0021 15.7 -0.3 14 5-18 2-15 (76) 4 1nxh_A MTH396 protein; hypothe 8.1 45 0.0019 15.9 -0.8 26 15-40 5-30 (126) 5 1mty_G Methane monooxygenase h 7.6 39 0.0016 16.2 -1.4 12 17-28 117-128 (162) 6 1mhy_G Methane monooxygenase h 7.3 41 0.0017 16.1 -1.4 12 17-28 121-132 (169) 7 1t98_A KICB protein, chromosom 6.6 1.2E+02 0.0049 13.9 0.7 15 26-40 148-163 (287) 8 3euh_A Protein KICB, chromosom 6.2 1.2E+02 0.0052 13.8 0.6 14 27-40 149-163 (440) 9 3dpt_A ROCO, RAB family protei 4.8 2.1E+02 0.0086 12.7 1.1 20 18-37 74-93 (332) 10 3eoj_A Bacteriochlorophyll A p 3.7 1.8E+02 0.0077 12.9 0.1 19 8-27 35-53 (366) No 1 >1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi} Probab=19.16 E-value=13 Score=18.54 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=8.8 Q ss_pred EECHHHHHHHHH Q ss_conf 433110134444 Q 537021.9.peg.3 25 FLDPIWIKNIFV 36 (42) Q Consensus 25 fldpiwiknifv 36 (42) --+|||||||.- T Consensus 125 ~~~~I~~r~ii~ 136 (153) T 1wcu_A 125 SNIPIYMRYIIY 136 (153) T ss_dssp CCCCEEEEEEEE T ss_pred CCCEEEEEEEEE T ss_conf 898588888876 No 2 >1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A* Probab=19.11 E-value=13 Score=18.53 Aligned_cols=10 Identities=60% Similarity=1.049 Sum_probs=7.5 Q ss_pred ECHHHHHHHH Q ss_conf 3311013444 Q 537021.9.peg.3 26 LDPIWIKNIF 35 (42) Q Consensus 26 ldpiwiknif 35 (42) -+|||||||. T Consensus 122 ~~~I~~r~ii 131 (153) T 1gwm_A 122 GDRIWIKNLV 131 (153) T ss_dssp CCCEEEEEEE T ss_pred CCEEEEEEEE T ss_conf 9848888887 No 3 >1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Probab=8.96 E-value=50 Score=15.69 Aligned_cols=14 Identities=64% Similarity=0.982 Sum_probs=11.2 Q ss_pred EEEEECCCHHHHHH Q ss_conf 07998497443111 Q 537021.9.peg.3 5 SFIIITPPATVLLP 18 (42) Q Consensus 5 sfiiitppatvllp 18 (42) +|++-|||++.||- T Consensus 2 ~f~~ktPP~s~llk 15 (76) T 1hc8_A 2 TFITKTPPAAVLLK 15 (76) T ss_dssp CCCCCCCCHHHHHH T ss_pred EEEECCCCHHHHHH T ss_conf 48975898899999 No 4 >1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1 Probab=8.15 E-value=45 Score=15.93 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=22.0 Q ss_pred HHHHHHCCCEEECHHHHHHHHHHHHH Q ss_conf 31110136334331101344444573 Q 537021.9.peg.3 15 VLLPMMDCNVFLDPIWIKNIFVPLKS 40 (42) Q Consensus 15 vllpmmdcnvfldpiwiknifvplks 40 (42) -++-+|.-|++.+--|...+++|+.. T Consensus 5 e~~~~mK~~ii~~~r~~eD~iiPiSk 30 (126) T 1nxh_A 5 ELMRLMKRRILESYRWQEDVVKPLSR 30 (126) T ss_dssp HHHHHHHHHHHTSHHHHHHTTTTTTT T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999998300079887877798 No 5 >1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ... Probab=7.64 E-value=39 Score=16.24 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=8.8 Q ss_pred HHHHCCCEEECH Q ss_conf 110136334331 Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42) Q Consensus 17 lpmmdcnvfldp 28 (42) -|||-.|+|++. T Consensus 117 PPvmPvN~F~~t 128 (162) T 1mty_G 117 PPIMPVNYFLDG 128 (162) T ss_dssp TTTSCHHHHHHH T ss_pred CCCCCCHHCCHH T ss_conf 987760211322 No 6 >1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.23.3.1 PDB: 1mhz_G Probab=7.30 E-value=41 Score=16.11 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=8.8 Q ss_pred HHHHCCCEEECH Q ss_conf 110136334331 Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42) Q Consensus 17 lpmmdcnvfldp 28 (42) -|||-.|+|++. T Consensus 121 PPvmPvN~F~~t 132 (169) T 1mhy_G 121 PPVLPVNVFLRT 132 (169) T ss_dssp TTTSCHHHHHHH T ss_pred CCCCCCCCCCHH T ss_conf 987760101321 No 7 >1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1 Probab=6.63 E-value=1.2e+02 Score=13.87 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=12.1 Q ss_pred ECHHHHHHHHHHHH-H Q ss_conf 33110134444457-3 Q 537021.9.peg.3 26 LDPIWIKNIFVPLK-S 40 (42) Q Consensus 26 ldpiwiknifvplk-s 40 (42) -+--|-+|+|.||| | T Consensus 148 de~~W~~~V~a~LkyS 163 (287) T 1t98_A 148 DEFHWHRNVYAPLKYS 163 (287) T ss_dssp CHHHHHHHTHHHHHHT T ss_pred CHHHHHHHHHHCCCCC T ss_conf 8799998768406340 No 8 >3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} Probab=6.22 E-value=1.2e+02 Score=13.75 Aligned_cols=14 Identities=43% Similarity=0.964 Sum_probs=11.1 Q ss_pred CHHHHHHHHHHHH-H Q ss_conf 3110134444457-3 Q 537021.9.peg.3 27 DPIWIKNIFVPLK-S 40 (42) Q Consensus 27 dpiwiknifvplk-s 40 (42) +--|-+|+|.||| | T Consensus 149 e~~W~~nV~a~LkyS 163 (440) T 3euh_A 149 EFHWHRNVYAPLKYS 163 (440) T ss_dssp HHHHHHTTHHHHHHT T ss_pred HHHHHHHHHHCCCCC T ss_conf 799998758317441 No 9 >3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum} Probab=4.84 E-value=2.1e+02 Score=12.66 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.6 Q ss_pred HHHCCCEEECHHHHHHHHHH Q ss_conf 10136334331101344444 Q 537021.9.peg.3 18 PMMDCNVFLDPIWIKNIFVP 37 (42) Q Consensus 18 pmmdcnvfldpiwiknifvp 37 (42) +.++--|||||-|+-++|-. T Consensus 74 ~~L~d~VvL~P~Wl~~~~~~ 93 (332) T 3dpt_A 74 LDLSEIYVLDPHWVTIGVYR 93 (332) T ss_dssp TCCSTTCEECHHHHHHHHHH T ss_pred CCCCCEEEECHHHHHHHHHH T ss_conf 65577089775999999999 No 10 >3eoj_A Bacteriochlorophyll A protein; excitation energy transfer, beta sheet, gamma-turns, chromophore, electron transport, magnesium; HET: BCL; 1.30A {Prosthecochloris aestuarii 2K} PDB: 4bcl_A* 1m50_A* 3eni_A* 1ksa_A* 3bsd_A* Probab=3.73 E-value=1.8e+02 Score=12.90 Aligned_cols=19 Identities=47% Similarity=0.887 Sum_probs=14.8 Q ss_pred EECCCHHHHHHHHCCCEEEC Q ss_conf 98497443111013633433 Q 537021.9.peg.3 8 IITPPATVLLPMMDCNVFLD 27 (42) Q Consensus 8 iitppatvllpmmdcnvfld 27 (42) +-.|||.-||| .|||+-++ T Consensus 35 vNVP~a~pllp-~dc~iKi~ 53 (366) T 3eoj_A 35 VNVPAAIPLLP-TDCNIRID 53 (366) T ss_dssp ECSCCSCSSSS-EEEEEEEE T ss_pred ECCCCCCCCCC-CCCCEEEE T ss_conf 03898777766-66622762 Done!