Query         537021.9.peg.374_1
Match_columns 42
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 22:13:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_374.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1wcu_A CBM29_1, non-catalytic   19.2      13 0.00055   18.5  -0.8   12   25-36    125-136 (153)
  2 1gwm_A NCP1, non-catalytic pro  19.1      13 0.00056   18.5  -0.8   10   26-35    122-131 (153)
  3 1hc8_A Ribosomal protein L11;    9.0      50  0.0021   15.7  -0.3   14    5-18      2-15  (76)
  4 1nxh_A MTH396 protein; hypothe   8.1      45  0.0019   15.9  -0.8   26   15-40      5-30  (126)
  5 1mty_G Methane monooxygenase h   7.6      39  0.0016   16.2  -1.4   12   17-28    117-128 (162)
  6 1mhy_G Methane monooxygenase h   7.3      41  0.0017   16.1  -1.4   12   17-28    121-132 (169)
  7 1t98_A KICB protein, chromosom   6.6 1.2E+02  0.0049   13.9   0.7   15   26-40    148-163 (287)
  8 3euh_A Protein KICB, chromosom   6.2 1.2E+02  0.0052   13.8   0.6   14   27-40    149-163 (440)
  9 3dpt_A ROCO, RAB family protei   4.8 2.1E+02  0.0086   12.7   1.1   20   18-37     74-93  (332)
 10 3eoj_A Bacteriochlorophyll A p   3.7 1.8E+02  0.0077   12.9   0.1   19    8-27     35-53  (366)

No 1  
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=19.16  E-value=13  Score=18.54  Aligned_cols=12  Identities=25%  Similarity=0.384  Sum_probs=8.8

Q ss_pred             EECHHHHHHHHH
Q ss_conf             433110134444
Q 537021.9.peg.3   25 FLDPIWIKNIFV   36 (42)
Q Consensus        25 fldpiwiknifv   36 (42)
                      --+|||||||.-
T Consensus       125 ~~~~I~~r~ii~  136 (153)
T 1wcu_A          125 SNIPIYMRYIIY  136 (153)
T ss_dssp             CCCCEEEEEEEE
T ss_pred             CCCEEEEEEEEE
T ss_conf             898588888876


No 2  
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=19.11  E-value=13  Score=18.53  Aligned_cols=10  Identities=60%  Similarity=1.049  Sum_probs=7.5

Q ss_pred             ECHHHHHHHH
Q ss_conf             3311013444
Q 537021.9.peg.3   26 LDPIWIKNIF   35 (42)
Q Consensus        26 ldpiwiknif   35 (42)
                      -+|||||||.
T Consensus       122 ~~~I~~r~ii  131 (153)
T 1gwm_A          122 GDRIWIKNLV  131 (153)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCEEEEEEEE
T ss_conf             9848888887


No 3  
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=8.96  E-value=50  Score=15.69  Aligned_cols=14  Identities=64%  Similarity=0.982  Sum_probs=11.2

Q ss_pred             EEEEECCCHHHHHH
Q ss_conf             07998497443111
Q 537021.9.peg.3    5 SFIIITPPATVLLP   18 (42)
Q Consensus         5 sfiiitppatvllp   18 (42)
                      +|++-|||++.||-
T Consensus         2 ~f~~ktPP~s~llk   15 (76)
T 1hc8_A            2 TFITKTPPAAVLLK   15 (76)
T ss_dssp             CCCCCCCCHHHHHH
T ss_pred             EEEECCCCHHHHHH
T ss_conf             48975898899999


No 4  
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=8.15  E-value=45  Score=15.93  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             HHHHHHCCCEEECHHHHHHHHHHHHH
Q ss_conf             31110136334331101344444573
Q 537021.9.peg.3   15 VLLPMMDCNVFLDPIWIKNIFVPLKS   40 (42)
Q Consensus        15 vllpmmdcnvfldpiwiknifvplks   40 (42)
                      -++-+|.-|++.+--|...+++|+..
T Consensus         5 e~~~~mK~~ii~~~r~~eD~iiPiSk   30 (126)
T 1nxh_A            5 ELMRLMKRRILESYRWQEDVVKPLSR   30 (126)
T ss_dssp             HHHHHHHHHHHTSHHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999999998300079887877798


No 5  
>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ...
Probab=7.64  E-value=39  Score=16.24  Aligned_cols=12  Identities=50%  Similarity=0.783  Sum_probs=8.8

Q ss_pred             HHHHCCCEEECH
Q ss_conf             110136334331
Q 537021.9.peg.3   17 LPMMDCNVFLDP   28 (42)
Q Consensus        17 lpmmdcnvfldp   28 (42)
                      -|||-.|+|++.
T Consensus       117 PPvmPvN~F~~t  128 (162)
T 1mty_G          117 PPIMPVNYFLDG  128 (162)
T ss_dssp             TTTSCHHHHHHH
T ss_pred             CCCCCCHHCCHH
T ss_conf             987760211322


No 6  
>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.23.3.1 PDB: 1mhz_G
Probab=7.30  E-value=41  Score=16.11  Aligned_cols=12  Identities=42%  Similarity=0.750  Sum_probs=8.8

Q ss_pred             HHHHCCCEEECH
Q ss_conf             110136334331
Q 537021.9.peg.3   17 LPMMDCNVFLDP   28 (42)
Q Consensus        17 lpmmdcnvfldp   28 (42)
                      -|||-.|+|++.
T Consensus       121 PPvmPvN~F~~t  132 (169)
T 1mhy_G          121 PPVLPVNVFLRT  132 (169)
T ss_dssp             TTTSCHHHHHHH
T ss_pred             CCCCCCCCCCHH
T ss_conf             987760101321


No 7  
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=6.63  E-value=1.2e+02  Score=13.87  Aligned_cols=15  Identities=40%  Similarity=0.811  Sum_probs=12.1

Q ss_pred             ECHHHHHHHHHHHH-H
Q ss_conf             33110134444457-3
Q 537021.9.peg.3   26 LDPIWIKNIFVPLK-S   40 (42)
Q Consensus        26 ldpiwiknifvplk-s   40 (42)
                      -+--|-+|+|.||| |
T Consensus       148 de~~W~~~V~a~LkyS  163 (287)
T 1t98_A          148 DEFHWHRNVYAPLKYS  163 (287)
T ss_dssp             CHHHHHHHTHHHHHHT
T ss_pred             CHHHHHHHHHHCCCCC
T ss_conf             8799998768406340


No 8  
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli}
Probab=6.22  E-value=1.2e+02  Score=13.75  Aligned_cols=14  Identities=43%  Similarity=0.964  Sum_probs=11.1

Q ss_pred             CHHHHHHHHHHHH-H
Q ss_conf             3110134444457-3
Q 537021.9.peg.3   27 DPIWIKNIFVPLK-S   40 (42)
Q Consensus        27 dpiwiknifvplk-s   40 (42)
                      +--|-+|+|.||| |
T Consensus       149 e~~W~~nV~a~LkyS  163 (440)
T 3euh_A          149 EFHWHRNVYAPLKYS  163 (440)
T ss_dssp             HHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             799998758317441


No 9  
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=4.84  E-value=2.1e+02  Score=12.66  Aligned_cols=20  Identities=20%  Similarity=0.227  Sum_probs=14.6

Q ss_pred             HHHCCCEEECHHHHHHHHHH
Q ss_conf             10136334331101344444
Q 537021.9.peg.3   18 PMMDCNVFLDPIWIKNIFVP   37 (42)
Q Consensus        18 pmmdcnvfldpiwiknifvp   37 (42)
                      +.++--|||||-|+-++|-.
T Consensus        74 ~~L~d~VvL~P~Wl~~~~~~   93 (332)
T 3dpt_A           74 LDLSEIYVLDPHWVTIGVYR   93 (332)
T ss_dssp             TCCSTTCEECHHHHHHHHHH
T ss_pred             CCCCCEEEECHHHHHHHHHH
T ss_conf             65577089775999999999


No 10 
>3eoj_A Bacteriochlorophyll A protein; excitation energy transfer, beta sheet, gamma-turns, chromophore, electron transport, magnesium; HET: BCL; 1.30A {Prosthecochloris aestuarii 2K} PDB: 4bcl_A* 1m50_A* 3eni_A* 1ksa_A* 3bsd_A*
Probab=3.73  E-value=1.8e+02  Score=12.90  Aligned_cols=19  Identities=47%  Similarity=0.887  Sum_probs=14.8

Q ss_pred             EECCCHHHHHHHHCCCEEEC
Q ss_conf             98497443111013633433
Q 537021.9.peg.3    8 IITPPATVLLPMMDCNVFLD   27 (42)
Q Consensus         8 iitppatvllpmmdcnvfld   27 (42)
                      +-.|||.-||| .|||+-++
T Consensus        35 vNVP~a~pllp-~dc~iKi~   53 (366)
T 3eoj_A           35 VNVPAAIPLLP-TDCNIRID   53 (366)
T ss_dssp             ECSCCSCSSSS-EEEEEEEE
T ss_pred             ECCCCCCCCCC-CCCCEEEE
T ss_conf             03898777766-66622762


Done!