RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.374_1
         (42 letters)



>gnl|CDD|178895 PRK00140, rplK, 50S ribosomal protein L11; Validated.
          Length = 141

 Score = 25.9 bits (58), Expect = 2.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 5  SFIIITPPATVLL 17
          +FI  TPPA+VLL
Sbjct: 67 TFITKTPPASVLL 79


>gnl|CDD|165147 PHA02782, PHA02782, hypothetical protein; Provisional.
          Length = 503

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)

Query: 16 LLPMMDCNVFL---DPI 29
          LLPM +CN +L   DPI
Sbjct: 65 LLPMFECNEYLQIGDPI 81


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.332    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 695,934
Number of extensions: 24213
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.1 bits)