HHsearch alignment for GI: peg_393 and conserved domain: cd04261

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=97.46  E-value=0.0019  Score=43.10  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=63.9

Q ss_pred             EEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             8999867567247468999999999985189717998457-245788999708981155783466124899999997416
Q 537021.9.peg.3   27 TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG-GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGS  105 (150)
Q Consensus        27 tiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGg-g~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~  105 (150)
T Consensus         1 ~iV~KFGGtSv~~~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~---~~~---~~~~~e~d~ils--~GE   72 (239)
T cd04261           1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKE---ISP---RPPARELDVLLS--TGE   72 (239)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH---HCC---CCCHHHHHHHHH--HHH
T ss_conf             989997820139999999999999989866992899977987536889999998---706---999899988877--779


Q ss_pred             -HHHH-HHHHHHHCCCCEEEEEEEECCEE
Q ss_conf             -6899-99999828997687786558989
Q 537021.9.peg.3  106 -INKK-IVSLINQTGTQAIGICGKDGNMV  132 (150)
Q Consensus       106 -vn~~-lv~~L~~~g~~avglsg~dg~li  132 (150)
T Consensus        73 ~lsa~ll~~~L~~~G~~a~~~~~~~~~i~  101 (239)
T cd04261          73 QVSIALLAMALNRLGIKAISLTGWQAGIL  101 (239)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEHHHCCEE
T ss_conf             99999999999976997579686667543