HHsearch alignment of GI: peg_393 and MMDB domain: 1ybd_A_

>1ybd_A (A:) Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis}
Probab=99.02  E-value=1.6e-09  Score=81.62  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=90.5

Q ss_pred             HHHHCCCEEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCH
Q ss_conf             998759889998675672474-------6899999999998518971799845724578899970898115578346612
Q 537021.9.peg.3   20 VQFYENETIVVKYGGHVMNCT-------DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQ   92 (150)
Q Consensus        20 i~~~r~ktiVIK~GG~~l~d~-------~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~   92 (150)
                      .++++.+++|||+||+++.|+       +...+++++|+.++..+.++++|||++.+.....+          ..+.+++
T Consensus         2 m~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~   71 (239)
T 1ybd_A            2 TQQIKYKRVLLKLSGESLXGSDPFGINHDTIVQTVGEIAEVVKXGVQVGIVVGGGNIFRGVSA----------QAGSXDR   71 (239)
T ss_dssp             --CCSCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH----------HHTTSCH
T ss_pred             CCCCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----------CCCCCCC
T ss_conf             866647779999772134279998869999999999999999779979999434565564221----------2468764


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEE
Q ss_conf             48999999974166899999998289976877865589899997
Q 537021.9.peg.3   93 QTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEK  136 (150)
Q Consensus        93 ~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~  136 (150)
                      .+++.+........|..++..|++.|+++.++++.+..++....
T Consensus        72 ~~~~~~~~~~~~~~~~ll~~~l~~~g~~a~~~~~~~~~~~~~~~  115 (239)
T 1ybd_A           72 ATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETY  115 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf             12789999998999999999887548620100222114677677