Query 537021.9.peg.393_1 Match_columns 150 No_of_seqs 118 out of 1509 Neff 5.8 Searched_HMMs 23785 Date Tue May 24 19:52:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_393.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2buf_A Acetylglutamate kinase; 100.0 1.7E-36 7E-41 253.7 15.2 149 1-149 2-163 (300) 2 2v5h_A Acetylglutamate kinase; 100.0 2.8E-35 1.2E-39 245.8 12.4 143 7-149 31-174 (321) 3 2ap9_A NAG kinase, acetylgluta 100.0 1.5E-32 6.3E-37 228.3 14.1 142 7-148 7-155 (299) 4 3d2m_A Putative acetylglutamat 100.0 2.7E-32 1.1E-36 226.7 12.1 138 9-148 27-171 (456) 5 2bty_A Acetylglutamate kinase; 100.0 1.1E-31 4.5E-36 222.9 14.3 140 9-148 5-146 (282) 6 2rd5_A Acetylglutamate kinase- 100.0 7.3E-31 3.1E-35 217.5 13.2 141 8-148 19-161 (298) 7 2egx_A Putative acetylglutamat 99.9 7.1E-22 3E-26 159.9 9.9 109 27-138 1-114 (269) 8 2e9y_A Carbamate kinase; trans 99.8 3.2E-21 1.3E-25 155.7 2.0 113 24-136 3-131 (316) 9 1e19_A Carbamate kinase-like c 99.8 1.5E-19 6.2E-24 145.0 8.2 114 25-138 2-138 (314) 10 1gs5_A Acetylglutamate kinase; 99.8 1.3E-18 5.6E-23 138.9 12.8 121 26-146 3-124 (258) 11 3kzf_A Carbamate kinase; argin 99.7 5.7E-18 2.4E-22 134.9 1.4 107 22-128 2-124 (317) 12 2we5_A Carbamate kinase 1; arg 99.7 2.6E-17 1.1E-21 130.6 4.2 110 25-134 2-142 (310) 13 3k4o_A Isopentenyl phosphate k 99.2 5.2E-11 2.2E-15 90.2 9.8 105 26-132 7-125 (266) 14 3d40_A FOMA protein; fosfomyci 99.2 1E-11 4.4E-16 94.7 5.6 106 16-132 14-128 (286) 15 3ll9_A Isopentenyl phosphate k 99.2 1.6E-10 6.7E-15 87.1 10.2 102 25-128 2-112 (269) 16 3ll5_A Gamma-glutamyl kinase r 99.0 1.7E-09 7.2E-14 80.5 8.8 96 26-126 4-104 (249) 17 2ogx_A Molybdenum storage prot 98.8 5E-09 2.1E-13 77.5 6.0 99 12-127 33-133 (276) 18 2ogx_B Molybdenum storage prot 98.6 3.2E-07 1.4E-11 65.9 10.8 104 10-125 19-129 (270) 19 2brx_A Uridylate kinase; UMP k 98.3 4.4E-06 1.9E-10 58.6 10.1 100 11-120 5-109 (244) 20 2ako_A Glutamate 5-kinase; str 98.3 9.6E-06 4E-10 56.5 10.8 87 26-123 2-93 (251) 21 3nwy_A Uridylate kinase; allos 98.2 3E-05 1.3E-09 53.2 12.3 44 26-69 51-100 (281) 22 2jjx_A Uridylate kinase, UMP k 98.2 3.4E-05 1.4E-09 52.9 11.8 47 26-72 13-66 (255) 23 3ek6_A Uridylate kinase; UMPK 98.1 3.8E-05 1.6E-09 52.7 10.8 97 22-128 6-109 (243) 24 1z9d_A Uridylate kinase, UK, U 98.0 0.00011 4.5E-09 49.7 11.4 93 26-128 8-107 (252) 25 1ybd_A Uridylate kinase; alpha 98.0 0.00022 9.2E-09 47.7 12.7 95 21-125 3-104 (239) 26 2va1_A Uridylate kinase; UMPK, 97.8 3.4E-05 1.4E-09 52.9 6.6 62 18-79 16-85 (256) 27 2j4j_A Uridylate kinase; trans 97.8 4.2E-05 1.8E-09 52.4 6.6 54 27-80 2-60 (226) 28 2a1f_A Uridylate kinase; PYRH, 97.7 9.6E-05 4E-09 50.0 6.4 45 26-70 9-60 (247) 29 2ij9_A Uridylate kinase; struc 97.2 0.00059 2.5E-08 45.0 5.6 46 27-73 2-48 (219) 30 2j5v_A Glutamate 5-kinase; pro 97.1 0.019 7.9E-07 35.3 13.1 56 24-81 3-64 (367) 31 3ab4_A Aspartokinase; aspartat 95.8 0.09 3.8E-06 31.0 9.6 102 26-133 2-104 (421) 32 3l76_A Aspartokinase; alloster 95.8 0.12 4.9E-06 30.2 10.3 96 26-128 2-99 (600) 33 1h4x_A SPOIIAA, anti-sigma F f 91.5 0.65 2.7E-05 25.5 6.9 93 8-104 24-117 (117) 34 2vy9_A Anti-sigma-factor antag 91.4 0.82 3.4E-05 24.8 7.7 76 5-81 22-98 (123) 35 3c1m_A Probable aspartokinase; 89.0 1.2 4.8E-05 23.9 6.5 51 27-77 2-52 (473) 36 3men_A Acetylpolyamine aminohy 85.2 2.1 8.9E-05 22.2 7.4 63 11-73 278-346 (362) 37 3oir_A Sulfate transporter sul 80.7 3.2 0.00013 21.1 6.3 97 5-102 26-129 (135) 38 2j0w_A Lysine-sensitive aspart 80.1 3.3 0.00014 20.9 6.1 50 25-77 2-51 (449) 39 2cdq_A Aspartokinase; aspartat 79.3 3.5 0.00015 20.8 6.6 51 22-74 23-73 (510) 40 2ka5_A Putative anti-sigma fac 76.3 4.3 0.00018 20.2 6.6 78 5-83 31-109 (125) 41 1wek_A Hypothetical protein TT 75.3 4.3 0.00018 20.2 4.9 55 13-70 25-80 (217) 42 3ew8_A HD8, histone deacetylas 73.2 5.1 0.00021 19.7 7.0 64 11-74 242-312 (388) 43 3max_A HD2, histone deacetylas 67.4 6.8 0.00029 18.9 6.7 63 11-73 233-302 (367) 44 3mgl_A Sulfate permease family 62.4 8.5 0.00036 18.3 5.6 88 10-99 35-123 (130) 45 3dnp_A Stress response protein 62.4 2.3 9.8E-05 21.9 1.3 97 23-119 4-104 (290) 46 1nrw_A Hypothetical protein, h 59.9 3.6 0.00015 20.8 1.9 66 26-91 5-74 (288) 47 1v7z_A Creatininase, creatinin 57.7 9.9 0.00042 17.9 3.9 38 32-69 84-125 (260) 48 1sbo_A Putative anti-sigma fac 56.7 11 0.00044 17.7 8.2 76 6-82 24-100 (110) 49 3oiz_A Antisigma-factor antago 55.0 5 0.00021 19.8 2.0 75 4-79 18-97 (99) 50 3epr_A Hydrolase, haloacid deh 54.9 11 0.00047 17.5 3.9 56 26-81 6-65 (264) 51 1th8_B Anti-sigma F factor ant 53.8 12 0.00049 17.4 6.3 74 9-83 26-100 (116) 52 1rlm_A Phosphatase; HAD family 53.4 6.9 0.00029 18.9 2.5 68 25-92 3-75 (271) 53 1xpj_A Hypothetical protein; s 50.6 13 0.00056 17.1 4.7 55 26-80 2-79 (126) 54 1i52_A 4-diphosphocytidyl-2-C- 47.2 15 0.00063 16.8 3.6 34 74-107 195-232 (236) 55 1qpg_A PGK, 3-phosphoglycerate 46.4 15 0.00064 16.7 6.7 64 22-86 12-96 (415) 56 2f60_K Pyruvate dehydrogenase 46.4 15 0.00064 16.7 4.1 42 66-107 12-57 (64) 57 3okr_A 2-C-methyl-D-erythritol 44.1 17 0.0007 16.5 3.8 52 10-73 35-87 (231) 58 1jqo_A Phosphoenolpyruvate car 43.7 16 0.00069 16.5 3.2 58 33-93 608-674 (970) 59 1c3p_A Protein (HDLP (histone 42.0 18 0.00075 16.3 5.3 63 12-74 234-303 (375) 60 2pd2_A Hypothetical protein ST 41.7 18 0.00076 16.2 7.0 85 10-101 14-99 (108) 61 2fsv_C NAD(P) transhydrogenase 38.8 20 0.00084 15.9 3.6 37 47-83 36-82 (203) 62 3fse_A Two-domain protein cont 38.1 21 0.00086 15.9 5.4 67 47-136 95-162 (365) 63 1b43_A Protein (FEN-1); nuclea 37.2 21 0.00089 15.8 4.6 28 41-68 56-83 (340) 64 1djl_A Transhydrogenase DIII; 37.2 21 0.00089 15.8 3.6 36 48-83 36-81 (207) 65 2c4n_A Protein NAGD; nucleotid 36.4 22 0.00092 15.7 4.1 55 26-80 4-62 (250) 66 3a2k_A TRNA(Ile)-lysidine synt 36.1 22 0.00093 15.7 4.4 68 13-84 2-84 (464) 67 1o2d_A Alcohol dehydrogenase, 36.0 22 0.00093 15.7 2.9 36 52-87 35-78 (371) 68 1wy5_A TILS, hypothetical UPF0 35.7 22 0.00094 15.6 5.4 71 10-84 5-90 (317) 69 2px7_A 2-C-methyl-D-erythritol 32.1 26 0.0011 15.3 3.8 15 55-69 103-118 (236) 70 2a67_A Isochorismatase family 31.6 6.2 0.00026 19.2 -0.6 87 40-131 27-113 (167) 71 3ghf_A Septum site-determining 31.5 26 0.0011 15.2 6.4 65 21-91 43-109 (120) 72 3irs_A Uncharacterized protein 31.0 27 0.0011 15.1 3.9 53 24-77 150-203 (291) 73 2wfb_A Putative uncharacterize 30.9 27 0.0011 15.1 3.4 51 51-106 61-112 (120) 74 1zwv_A Lipoamide acyltransfera 30.3 27 0.0012 15.1 3.3 34 66-99 10-47 (58) 75 1mio_A Nitrogenase molybdenum 29.8 28 0.0012 15.0 5.5 51 5-64 315-365 (533) 76 3lwd_A 6-phosphogluconolactona 29.6 28 0.0012 15.0 3.5 22 1-22 2-23 (226) 77 3lqy_A Putative isochorismatas 29.5 5.6 0.00023 19.5 -1.1 91 40-131 34-125 (190) 78 1pno_A NAD(P) transhydrogenase 29.4 28 0.0012 15.0 4.2 36 48-83 14-59 (180) 79 2bru_C NAD(P) transhydrogenase 29.4 28 0.0012 15.0 3.5 36 48-83 21-66 (186) 80 2eq9_C Pyruvate dehydrogenase 29.0 28 0.0012 15.0 2.4 34 66-99 3-40 (41) 81 1d4o_A NADP(H) transhydrogenas 28.9 29 0.0012 14.9 3.6 27 57-83 22-58 (184) 82 1iok_A Chaperonin 60; chaperon 28.5 29 0.0012 14.9 5.5 107 20-132 369-487 (545) 83 1rw7_A YDR533CP; alpha-beta sa 28.5 29 0.0012 14.9 2.4 54 82-135 155-219 (243) 84 2pr7_A Haloacid dehalogenase/e 28.4 29 0.0012 14.9 6.6 99 27-126 4-119 (137) 85 2eq7_C 2-oxoglutarate dehydrog 27.5 15 0.00064 16.7 0.8 34 66-99 2-39 (40) 86 1rxw_A Flap structure-specific 27.2 31 0.0013 14.7 3.7 28 41-68 56-83 (336) 87 2eq8_C Pyruvate dehydrogenase 26.6 32 0.0013 14.7 3.0 33 66-98 2-38 (40) 88 3kkl_A Probable chaperone prot 26.0 33 0.0014 14.6 3.4 54 82-135 155-219 (244) 89 2yx6_A Hypothetical protein PH 25.9 33 0.0014 14.6 4.9 51 51-106 57-107 (121) 90 2ho4_A Haloacid dehalogenase-l 25.7 33 0.0014 14.6 4.0 39 26-64 8-46 (259) 91 3hxk_A Sugar hydrolase; alpha- 25.4 33 0.0014 14.5 2.8 22 60-81 46-76 (276) 92 1vgw_A 4-diphosphocytidyl-2C-m 24.9 34 0.0014 14.5 3.5 15 58-72 104-119 (231) 93 3irv_A Cysteine hydrolase; str 24.9 12 0.00052 17.3 -0.0 90 41-131 48-151 (233) 94 2pbl_A Putative esterase/lipas 24.6 34 0.0014 14.4 5.2 103 10-129 22-138 (262) 95 1l1s_A Hypothetical protein MT 24.5 35 0.0015 14.4 6.6 85 10-101 19-104 (113) 96 3bg2_A DGTP triphosphohydrolas 24.1 17 0.0007 16.5 0.5 39 40-79 102-140 (444) 97 2oyc_A PLP phosphatase, pyrido 23.3 36 0.0015 14.3 3.5 73 4-81 5-81 (306) 98 3llo_A Prestin; STAS domain, c 22.9 37 0.0016 14.2 7.3 77 5-82 33-120 (143) 99 1a76_A Flap endonuclease-1 pro 22.5 38 0.0016 14.2 4.8 29 41-69 56-84 (326) 100 2vrn_A Protease I, DR1199; cys 22.0 39 0.0016 14.1 3.9 63 50-135 101-164 (190) 101 1wde_A Probable diphthine synt 22.0 39 0.0016 14.1 3.8 60 18-82 76-135 (294) 102 1zzg_A Glucose-6-phosphate iso 21.9 39 0.0016 14.1 7.6 88 7-101 47-139 (415) 103 3f1c_A Putative 2-C-methyl-D-e 21.3 40 0.0017 14.0 4.1 28 75-102 201-232 (246) 104 1rdu_A Conserved hypothetical 21.1 40 0.0017 14.0 3.7 51 51-106 56-106 (116) 105 1ul1_X Flap endonuclease-1; pr 21.0 41 0.0017 14.0 4.2 28 41-68 61-88 (379) 106 2fi1_A Hydrolase, haloacid deh 20.5 42 0.0017 13.9 3.3 82 43-125 84-179 (190) 107 3i4t_A Diphthine synthase; nia 20.3 42 0.0018 13.9 3.9 57 19-81 89-145 (292) 108 1g2i_A Protease I; intracellul 20.3 42 0.0018 13.9 5.7 81 28-135 64-149 (166) 109 1u55_A Heme-based methyl-accep 20.2 42 0.0018 13.9 2.3 30 70-99 22-53 (188) No 1 >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Probab=100.00 E-value=1.7e-36 Score=253.69 Aligned_cols=149 Identities=40% Similarity=0.739 Sum_probs=138.0 Q ss_pred CCCHHHHHCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCC Q ss_conf 96002322062289999999987598899986756724746899999999998518971799845724578899970898 Q 537021.9.peg.3 1 MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIK 80 (150) Q Consensus 1 ~~~~~~~~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~ 80 (150) |++.-+...|++||||+|||++|||||||||+||+++.|++++.++++||++|+.+|+++|||||||||+++.++++|++ T Consensus 2 ~~~~~~~~~~~~l~~a~pYi~~~r~ktiVIKlGGs~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~g~~ 81 (300) T 2buf_A 2 LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIE 81 (300) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCC T ss_conf 87678999999999977999997899899998944416867999999999999987994999938837879999975997 Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCC-------------CCCCCCCC Q ss_conf 11557834661248999999974166899999998289976877865589899997475-------------21117995 Q 537021.9.peg.3 81 SKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH-------------SLRLSPNT 147 (150) Q Consensus 81 ~~~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~~-------------~lg~vg~~ 147 (150) ++|++|+|+||+++++++++++.|++|+.|++.|+++|++|+++++.|++++.+++... ++|++|++ T Consensus 82 ~~~~~g~r~t~~~~~~~~~~~~~g~in~~lv~~L~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~id~g~~g~v 161 (300) T 2buf_A 82 SHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEV 161 (300) T ss_dssp CCBSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEE T ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 42017865787889999999999889999999998668630215666663257531353113652233223225654445 Q ss_pred CC Q ss_conf 10 Q 537021.9.peg.3 148 KK 149 (150) Q Consensus 148 ~k 149 (150) ++ T Consensus 162 ~~ 163 (300) T 2buf_A 162 TG 163 (300) T ss_dssp EE T ss_pred CC T ss_conf 65 No 2 >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Probab=100.00 E-value=2.8e-35 Score=245.80 Aligned_cols=143 Identities=44% Similarity=0.781 Sum_probs=136.3 Q ss_pred HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC Q ss_conf 22062289999999987598899986756724746899999999998518971799845724578899970898115578 Q 537021.9.peg.3 7 QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG 86 (150) Q Consensus 7 ~~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G 86 (150) ..+|.+|+||+|||++|||||||||+||+++.|++++++|++||++|+.+|+++|||||||||+++.+.+.|++++|++| T Consensus 31 ~~~~~~l~ea~pyi~~~~~k~iVIKlGGs~l~d~~~~~~l~~dIa~L~~~G~~vVlVhGgg~~i~~~l~~~gi~~~~~~g 110 (321) T 2v5h_A 31 ADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNG 110 (321) T ss_dssp CCHHHHHHHTHHHHHHTTTCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSS T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCCC T ss_conf 89999999977999985899899998907835987999999999999987996999958963455148876998510378 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCC-CCCCCCCCCC Q ss_conf 34661248999999974166899999998289976877865589899997475-2111799510 Q 537021.9.peg.3 87 LRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH-SLRLSPNTKK 149 (150) Q Consensus 87 ~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~~-~lg~vg~~~k 149 (150) +|+|+++++++++|+++|.+|..+++.+++.|.+|+++++.+++++.+++.+. +++++|++++ T Consensus 111 ~r~t~~~~~~i~~~vl~~~~~~~l~~~l~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 174 (321) T 2v5h_A 111 LRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNS 174 (321) T ss_dssp SBCBCHHHHHHHHHHHHHTHHHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 6678688999999999857899999999863865123235445438864055312354344210 No 3 >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2 Probab=100.00 E-value=1.5e-32 Score=228.32 Aligned_cols=142 Identities=37% Similarity=0.726 Sum_probs=133.0 Q ss_pred HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC Q ss_conf 22062289999999987598899986756724746899999999998518971799845724578899970898115578 Q 537021.9.peg.3 7 QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG 86 (150) Q Consensus 7 ~~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G 86 (150) ..||++|+||+|||++|||||||||+||+++.|++++.+|++||++|+..|+++|||||||||+++++.++|++++|++| T Consensus 7 ~~~a~~l~~a~PYi~~~r~ktiVIKlGGsvl~d~~~~~~l~~dIa~L~~~G~~vVlVhG~g~~i~~~l~~~g~~~~~~~g 86 (299) T 2ap9_A 7 HIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGG 86 (299) T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSS T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCC T ss_conf 78999999988999996899899998916855977999999999999977996999958953546899976998500467 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCC-------CCCCCCCCC Q ss_conf 34661248999999974166899999998289976877865589899997475-------211179951 Q 537021.9.peg.3 87 LRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH-------SLRLSPNTK 148 (150) Q Consensus 87 ~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~~-------~lg~vg~~~ 148 (150) .|+|++++++.+.+++.+.++..+++.++.+|.++.++++.+++++.|.+... +++++|+++ T Consensus 87 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~v~ 155 (299) T 2ap9_A 87 FRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVD 155 (299) T ss_dssp SCCBCHHHHHHHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 646738999999999761688999999984698522344423551232022200356555454025301 No 4 >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Probab=99.98 E-value=2.7e-32 Score=226.71 Aligned_cols=138 Identities=17% Similarity=0.287 Sum_probs=120.6 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCC Q ss_conf 06228999999998759889998675672474689999999999851897179984572457889997089811557834 Q 537021.9.peg.3 9 QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLR 88 (150) Q Consensus 9 ~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~R 88 (150) -..|||||+|||++|||||||||+||+++.++++ .++++||++|+..|+++||||||||||+++++++|++++|++|+| T Consensus 27 ~~~~~r~a~pyi~~~r~ktiVIklGG~al~~~~l-~~~~~dIa~L~~~G~~vVLVHGgGpqV~~ll~~~gi~~~~~~g~R 105 (456) T 3d2m_A 27 FVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTL-NKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLR 105 (456) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECGGGGTSTHH-HHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCC T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHH-HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 9999886028899748998999979056187789-999999999998898399991889999999997799976749987 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEEECCEEEEEECCC----CCCCCCCCC Q ss_conf 66124899999997416689999999828---9976877865589899997475----211179951 Q 537021.9.peg.3 89 ITDQQTAEVVEMVLAGSINKKIVSLINQT---GTQAIGICGKDGNMVFAEKARH----SLRLSPNTK 148 (150) Q Consensus 89 VTd~~tl~iv~~vL~G~vn~~lv~~L~~~---g~~avglsg~dg~li~a~~~~~----~lg~vg~~~ 148 (150) +||+++|+++++++. .++..+...+... ...++++++.|++++.|+|... +++++|+++ T Consensus 106 vT~~~~l~~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~v~ 171 (456) T 3d2m_A 106 VTDETSLGQAQQFAG-TVRSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIR 171 (456) T ss_dssp CBCHHHHHHHHHHHH-HHHHHHHHHHHTC--------CCCEECCSCEEEEECCEETTEECBTBEEEE T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC T ss_conf 798999999999999-889999999985026543454442124632786540113476655234300 No 5 >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Probab=99.98 E-value=1.1e-31 Score=222.87 Aligned_cols=140 Identities=43% Similarity=0.789 Sum_probs=132.5 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCC Q ss_conf 06228999999998759889998675672474689999999999851897179984572457889997089811557834 Q 537021.9.peg.3 9 QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLR 88 (150) Q Consensus 9 ~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~R 88 (150) ....||||+|||++||+||||||+||+++.|++.++++++||++|+..|.++|||||||+++++.+.++|+++++++|+| T Consensus 5 ~~~~~~~a~pyi~~~~~k~iVIKiGgs~l~~~~~~~~l~~~Ia~L~~~G~~vVlVhGg~~~~~~~l~~~gi~~~~~~g~~ 84 (282) T 2bty_A 5 TVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHR 84 (282) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSB T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 88999997899998689989999790561784399999999999998899699996884454689998799740348865 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECC--CCCCCCCCCC Q ss_conf 66124899999997416689999999828997687786558989999747--5211179951 Q 537021.9.peg.3 89 ITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKAR--HSLRLSPNTK 148 (150) Q Consensus 89 VTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~--~~lg~vg~~~ 148 (150) +|++++++++++++.|.+|+.++..|++.|.+++++++.+.+++.+++.. .+++++|+++ T Consensus 85 ~t~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~a~~~~~~~~~~~~~~~~~~~~d~~~~g~~~ 146 (282) T 2bty_A 85 VTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVK 146 (282) T ss_dssp CBCHHHHHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEE T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 67677899999999999999999998645888056246666505740244345324344010 No 6 >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Probab=99.97 E-value=7.3e-31 Score=217.54 Aligned_cols=141 Identities=42% Similarity=0.783 Sum_probs=133.2 Q ss_pred HCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCC Q ss_conf 20622899999999875988999867567247468999999999985189717998457245788999708981155783 Q 537021.9.peg.3 8 FQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGL 87 (150) Q Consensus 8 ~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~ 87 (150) +++.+||||+|||++|||||||||+||+++.|++.+++|++||++|+..|+++||||||++|+++.+.++++++++.+|+ T Consensus 19 ~~~~~l~~~~pyi~~~~~k~iVIKiGgs~l~~~~~~~~~~~dIa~L~~~G~~vVlVhGg~~~~~~~l~~~~~~~~~~~g~ 98 (298) T 2rd5_A 19 YRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGL 98 (298) T ss_dssp HHHHHHHHTHHHHHHTTTCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTE T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC T ss_conf 99999999789999868997999989247279779999999999999879959999188357579999736661204665 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCC--CCCCCCCCC Q ss_conf 4661248999999974166899999998289976877865589899997475--211179951 Q 537021.9.peg.3 88 RITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH--SLRLSPNTK 148 (150) Q Consensus 88 RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~~--~lg~vg~~~ 148 (150) |+|+.++++++.+++.+..|+.+++.|+++|.+|.++++.+++++.+++... +++++|.++ T Consensus 99 r~t~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 161 (298) T 2rd5_A 99 RVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVA 161 (298) T ss_dssp ECBCHHHHHHHHHHHHHTHHHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCCCCCEEE T ss_conf 578778878999999988899999999965997413123457623312200136567332153 No 7 >2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Thermus thermophilus HB8} Probab=99.86 E-value=7.1e-22 Score=159.88 Aligned_cols=109 Identities=35% Similarity=0.568 Sum_probs=103.2 Q ss_pred EEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC-----CCCCCHHHHHHHHHH Q ss_conf 899986756724746899999999998518971799845724578899970898115578-----346612489999999 Q 537021.9.peg.3 27 TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG-----LRITDQQTAEVVEMV 101 (150) Q Consensus 27 tiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G-----~RVTd~~tl~iv~~v 101 (150) +||||+||+++.+. +++++||+.|+..|.++|||||||||++++++++|++++|+++ +|+||+++|++++++ T Consensus 1 iiVIKlGGs~~~~~---~~~~~~ia~L~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~~~rvt~~~~l~~~~~~ 77 (269) T 2egx_A 1 MIVVKVGGAEGINY---EAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMV 77 (269) T ss_dssp CEEEEECCSTTCCH---HHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHHHHHHHHH T ss_pred CEEEEECCHHHCCH---HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 98999787043099---999999999997899299984898999999998699975555644322145799999999987 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECC Q ss_conf 7416689999999828997687786558989999747 Q 537021.9.peg.3 102 LAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKAR 138 (150) Q Consensus 102 L~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~ 138 (150) +.+.+|+.+++.|...|.++.++++.+++++.+.+.. T Consensus 78 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 114 (269) T 2egx_A 78 YCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKT 114 (269) T ss_dssp HHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC- T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC T ss_conf 3437889999999972653102210125531100203 No 8 >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=99.81 E-value=3.2e-21 Score=155.72 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=102.4 Q ss_pred CCCEEEEEECHHHHCCH----------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCC----- Q ss_conf 59889998675672474----------689999999999851897179984572457889997089811557834----- Q 537021.9.peg.3 24 ENETIVVKYGGHVMNCT----------DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLR----- 88 (150) Q Consensus 24 r~ktiVIK~GG~~l~d~----------~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~R----- 88 (150) ++|+||||+||++|.++ ..++++++||+.|+..|+++||||||||||++++++++++++|..+.| T Consensus 3 ~~k~~VIKlGG~al~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVHGGG~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (316) T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIAT 82 (316) T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHH T ss_pred CCCEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 99989999886873899877788999999999999999999789879998889799999999668877664786523788 Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEE Q ss_conf -661248999999974166899999998289976877865589899997 Q 537021.9.peg.3 89 -ITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEK 136 (150) Q Consensus 89 -VTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li~a~~ 136 (150) +|+.+++..+.++|.+.+++.++..+...++.++++++.|..+..+.+ T Consensus 83 ~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~l~~~d~~~~~~~k 131 (316) T 2e9y_A 83 AMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSK 131 (316) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCC T ss_conf 8779999999999999999886677888736704742702555531234 No 9 >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Probab=99.79 E-value=1.5e-19 Score=145.02 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=99.7 Q ss_pred CCEEEEEECHHHHCCH----------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHH Q ss_conf 9889998675672474----------689999999999851897179984572457889997089811557834661248 Q 537021.9.peg.3 25 NETIVVKYGGHVMNCT----------DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQT 94 (150) Q Consensus 25 ~ktiVIK~GG~~l~d~----------~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~t 94 (150) +|+||||+||++|.++ ..++++++||+.|+..|.++||||||||||+++|.++++++.|.++.|+|+.+. T Consensus 2 ~k~IVIKiGGsal~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVHGGgp~i~~~l~~~~~~~~~~~~~~~~~~~~ 81 (314) T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 81 (314) T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_pred CCEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 97799998856617998778889999999999999999998898799986887999999997688634468863262889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCE-------------EEEEEEECCEEEEEECC Q ss_conf 999999974166899999998289976-------------87786558989999747 Q 537021.9.peg.3 95 AEVVEMVLAGSINKKIVSLINQTGTQA-------------IGICGKDGNMVFAEKAR 138 (150) Q Consensus 95 l~iv~~vL~G~vn~~lv~~L~~~g~~a-------------vglsg~dg~li~a~~~~ 138 (150) +..+.+++.+.+...+...+...+.+. .++++.+++.+.+++.. T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (314) T 1e19_A 82 GAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYD 138 (314) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEEEEC T ss_conf 999999999999999999998447548899999971401677776427824765400 No 10 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* Probab=99.79 E-value=1.3e-18 Score=138.89 Aligned_cols=121 Identities=23% Similarity=0.425 Sum_probs=112.0 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 8899986756724746899999999998518971-799845724578899970898115578346612489999999741 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNIT-PVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAG 104 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k-~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G 104 (150) +.||||+||+++.|++.+.+|++||+.|+..|.+ +|||||||||++.+++++|+++++.+|.|+|+++++....+++.+ T Consensus 3 ~~IVIKiGGs~l~d~~~~~~~~~~Ia~l~~~g~~~vVvvhG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258) T 1gs5_A 3 NPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAG 82 (258) T ss_dssp CCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHT T ss_pred CCEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 87899989104059899999999999999779975999879817777789873997402377543318899999999999 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCCCCCCCC Q ss_conf 668999999982899768778655898999974752111799 Q 537021.9.peg.3 105 SINKKIVSLINQTGTQAIGICGKDGNMVFAEKARHSLRLSPN 146 (150) Q Consensus 105 ~vn~~lv~~L~~~g~~avglsg~dg~li~a~~~~~~lg~vg~ 146 (150) .+|..+...+...|..+..++..+.+.....+...+....+. T Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (258) T 1gs5_A 83 TANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGL 124 (258) T ss_dssp HHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCHHCCCCCC T ss_conf 999999999864276420145434550000121111144453 No 11 >3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target, transferase; 3.00A {Giardia lamblia atcc 50803} Probab=99.67 E-value=5.7e-18 Score=134.86 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=80.4 Q ss_pred HHCCCEEEEEECHHHHCCH----------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 8759889998675672474----------689999999999851897179984572457889997089811557834661 Q 537021.9.peg.3 22 FYENETIVVKYGGHVMNCT----------DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITD 91 (150) Q Consensus 22 ~~r~ktiVIK~GG~~l~d~----------~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd 91 (150) .+++|+||||+||++|.++ +.++++++||+.|+..|.++||||||||||++++.++++.+.+.+++|.++ T Consensus 2 ~~~~k~IVIKiGGsal~~~~~~~~~~~~~~~~~~~a~~Ia~L~~~G~~vVvVHGGgp~v~~~~~~~~~~~~~~~~~~~~~ 81 (317) T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHV 81 (317) T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTSSSCCCCHHH T ss_pred CCCCCEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHH T ss_conf 98898899997835617998778889999999999999999998898699988885999999985655445676643218 Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 248999------9999741668999999982899768778655 Q 537021.9.peg.3 92 QQTAEV------VEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 (150) Q Consensus 92 ~~tl~i------v~~vL~G~vn~~lv~~L~~~g~~avglsg~d 128 (150) ...... +.++|.+.++...........+..+++++.| T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d 124 (317) T 3kzf_A 82 CGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKD 124 (317) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEECCCC T ss_conf 8888899999999999999998613104443204678742665 No 12 >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Probab=99.67 E-value=2.6e-17 Score=130.62 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=83.0 Q ss_pred CCEEEEEECHHHHCCH--------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHH Q ss_conf 9889998675672474--------68999999999985189717998457245788999708981155783466124899 Q 537021.9.peg.3 25 NETIVVKYGGHVMNCT--------DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAE 96 (150) Q Consensus 25 ~ktiVIK~GG~~l~d~--------~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~ 96 (150) +|+||||+||++|.++ +.++++++||+.|+..|.++||||||||||++.+.+++++++|..+.|+|+.+++. T Consensus 2 ~k~iVIKiGGs~l~~~~~~~~~~~~~l~~~~~~ia~L~~~G~~vVlVHGGG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (310) T 2we5_A 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAM 81 (310) T ss_dssp CCEEEEECCGGGGCCSSCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHH T ss_pred CCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH T ss_conf 97599997857748999882488999999999999999889979999368999999998636987545687003535534 Q ss_pred HHHHH-HH----------------------HHHHHHHHHHHHHCCCCEEEEEEEECCEEEE Q ss_conf 99999-74----------------------1668999999982899768778655898999 Q 537021.9.peg.3 97 VVEMV-LA----------------------GSINKKIVSLINQTGTQAIGICGKDGNMVFA 134 (150) Q Consensus 97 iv~~v-L~----------------------G~vn~~lv~~L~~~g~~avglsg~dg~li~a 134 (150) ...+. +. .+++..++..+...+.+++|+++.+++...+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 142 (310) T 2we5_A 82 TQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEA 142 (310) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHH T ss_conf 5899999887677766553130167878876776888999987237651113133228999 No 13 >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Probab=99.23 E-value=5.2e-11 Score=90.24 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=87.2 Q ss_pred CEEEEEECHHHHCC--------HHHHHHHHHHHHHH------HHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 88999867567247--------46899999999998------51897179984572457889997089811557834661 Q 537021.9.peg.3 26 ETIVVKYGGHVMNC--------TDLSKDFVNDIALL------KKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITD 91 (150) Q Consensus 26 ktiVIK~GG~~l~d--------~~l~~~~~~dI~ll------~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd 91 (150) ..+|||+||+++.+ .+.+.+++++|+.+ ...|.++|+|||||+.-... .+....+.+.++.|+++ T Consensus 7 m~vViKiGGs~l~~~~~~~~~~~~~l~~i~~~i~~l~~~~~~~~~~~~~ivv~GgG~~~~~~-~~~~~~~~~~~~~~~~~ 85 (266) T 3k4o_A 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPV-AKKYLKIEDGKKIFINM 85 (266) T ss_dssp CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHH-HGGGEEECSSSEEECCH T ss_pred EEEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHCCCCCCCCCHHHHH T ss_conf 58999981244449976667179999999999999998314664498189997983888899-98415566665212458 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEE Q ss_conf 24899999997416689999999828997687786558989 Q 537021.9.peg.3 92 QQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMV 132 (150) Q Consensus 92 ~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li 132 (150) ++++..+.+++ ..+|..+++.|+..|++|.++++.+..+. T Consensus 86 ~~~~~~~~~~~-~~L~~~~~~~l~~~gi~a~~l~~~~~~~~ 125 (266) T 3k4o_A 86 EKGFWEIQRAM-RRFNNIIIDTLQSYDIPAVSIQPSSFVVF 125 (266) T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHTTTCCEEEECGGGTCEE T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHCCCCEEECCCCCCCCC T ss_conf 99999999999-99999999999986995142156434223 No 14 >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* Probab=99.22 E-value=1e-11 Score=94.70 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=83.0 Q ss_pred HHHHHHHHCCCEEEEEECHHHHCCH--------HHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHCCCCCEEECC Q ss_conf 9999998759889998675672474--------68999999999985189-71799845724578899970898115578 Q 537021.9.peg.3 16 VLPFVQFYENETIVVKYGGHVMNCT--------DLSKDFVNDIALLKKSN-ITPVIVHGGGPQIGAVLEKMGIKSKFENG 86 (150) Q Consensus 16 a~pYi~~~r~ktiVIK~GG~~l~d~--------~l~~~~~~dI~ll~~~G-~k~ViVHGgg~qI~~~l~~~gi~~~~v~G 86 (150) ++||-..+..+++|||+||+++.++ +.+.+|+++|+.|...| .++|||||||++....+++.+++..+ T Consensus 14 ~~p~~~~m~~~~iVIKlGGs~lt~~~~~~~~~~~~l~~l~~~I~~l~~~~~~~viVvhGgG~~g~~~~~~~~~~~~~--- 90 (286) T 3d40_A 14 LVPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAF--- 90 (286) T ss_dssp CCCCSTTSCCSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC------------CC--- T ss_pred CCCCCHHCCCCEEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCH--- T ss_conf 78762112899899997368801898767708999999999999999839955999858811425468653887403--- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEE Q ss_conf 3466124899999997416689999999828997687786558989 Q 537021.9.peg.3 87 LRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMV 132 (150) Q Consensus 87 ~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg~li 132 (150) + .....++ ..++|..+++.|..+|+++++++..+..+. T Consensus 91 ---~----~~~~~~~-~~~l~~~~~~~l~~~gi~a~~~~~~~~~~~ 128 (286) T 3d40_A 91 ---S----LAGLTEA-TFEVKKRWAEKLRGIGVDAFPLQLAAMCTL 128 (286) T ss_dssp ---T----THHHHHH-HHHHHHHHHHHHHHTTCCEEECCGGGTEEE T ss_pred ---H----HHHHHHH-HHHHHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf ---6----9999999-999999999999980998588531000003 No 15 >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Probab=99.18 E-value=1.6e-10 Score=87.10 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=84.5 Q ss_pred CCEEEEEECHHHHCC---------HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHH Q ss_conf 988999867567247---------46899999999998518971799845724578899970898115578346612489 Q 537021.9.peg.3 25 NETIVVKYGGHVMNC---------TDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTA 95 (150) Q Consensus 25 ~ktiVIK~GG~~l~d---------~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl 95 (150) ...+|||+||+++.+ .+.+..+++++..+ .+.++++|||||+....++.+.++++.+.++.++++.+.. T Consensus 2 ~~miVIKiGGs~lt~k~~~~~~~~~~~l~~i~~~l~~~--~~~~vvVV~GgG~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (269) T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNA--SPSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269) T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHH--CCSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH T ss_pred CCEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 96899998115524899875535699999999999983--7985799987705537999860734345678861199999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 999999741668999999982899768778655 Q 537021.9.peg.3 96 EVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 (150) Q Consensus 96 ~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~d 128 (150) ..+.+.+.+++|..+++.|.+.|+++++++..+ T Consensus 80 ~~~~~~~~~~l~~~~~~~l~~~gi~a~~~~~~~ 112 (269) T 3ll9_A 80 FALTQNWVKKLNSHVCDALLAEGIPAVSMQPSA 112 (269) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 999999999999999999997599656415632 No 16 >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Probab=99.00 E-value=1.7e-09 Score=80.50 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=72.9 Q ss_pred CEEEEEECHHHHCCHH----HHHHHHHHH-HHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 8899986756724746----899999999-99851897179984572457889997089811557834661248999999 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTD----LSKDFVNDI-ALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEM 100 (150) Q Consensus 26 ktiVIK~GG~~l~d~~----l~~~~~~dI-~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~ 100 (150) |.+|||+||+++.|++ +...+++++ .+++..+.++|+|||||++.+..+.+.++++.+.+..+ .++.+..+ T Consensus 4 k~iVIKiGGs~l~~~~~~~~~~~~~~~~i~~~l~~~~~~vivvhGgg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (249) T 3ll5_A 4 TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSS----IGYSIVHR 79 (249) T ss_dssp CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHTCTTEEEEEECCGGGTHHHHHHHTCSEECCHHHH----HHHHHHHH T ss_pred CEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHH----HHHHHHHH T ss_conf 88999976256239974015899999999999980997799992859986799985689877206899----99999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 97416689999999828997687786 Q 537021.9.peg.3 101 VLAGSINKKIVSLINQTGTQAIGICG 126 (150) Q Consensus 101 vL~G~vn~~lv~~L~~~g~~avglsg 126 (150) . ..++|..++..+...+..+++++. T Consensus 80 ~-~~~l~~~~~~~~~~~~~~~~~~~~ 104 (249) T 3ll5_A 80 D-MENLDLMVIDAMIEMGMRPISVPI 104 (249) T ss_dssp H-HHHHHHHHHHHHHHTTCCEEECCG T ss_pred H-HHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9-999999999873222765532244 No 17 >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Probab=98.82 E-value=5e-09 Score=77.49 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=65.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEECHHHHC-CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 289999999987598899986756724-7468999999999985189717998457245788999708981155783466 Q 537021.9.peg.3 12 ILEQVLPFVQFYENETIVVKYGGHVMN-CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRIT 90 (150) Q Consensus 12 ~l~ea~pYi~~~r~ktiVIK~GG~~l~-d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVT 90 (150) -..+++||++ |||+||++|+ +++.+.+|+++|+.++..| ++|||||||+....+.+ .+.+ .|++.+ T Consensus 33 ~~~~~~~~~~-------VIKiGGsvl~~~~~~~~~l~~~Ia~l~~~~-~~vIVhGGG~~a~~~~~-~~~~----~~~~~~ 99 (276) T 2ogx_A 33 RPIRLLPWLQ-------VVKIGGRVMDRGADAILPLVEELRKLLPEH-RLLILTGAGVRARHVFS-VGLD----LGLPVG 99 (276) T ss_dssp CCCCSSTTEE-------EEEECHHHHTTTHHHHHHHHHHHHHHTTTC-EEEEEECCTHHHHHHHH-HHHH----TTCCHH T ss_pred CHHHHCCCEE-------EEEECHHEECCCHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHH-HHHH----CCCCHH T ss_conf 7155478738-------998510000788799999999999997299-48999897199987999-8645----289746 Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEEE Q ss_conf 124899999997416689-9999998289976877865 Q 537021.9.peg.3 91 DQQTAEVVEMVLAGSINK-KIVSLINQTGTQAIGICGK 127 (150) Q Consensus 91 d~~tl~iv~~vL~G~vn~-~lv~~L~~~g~~avglsg~ 127 (150) ..+.+. ++.. ..|. .+...|.+.|..+++.+.. T Consensus 100 ~~~~~~---~~~~-~ln~~~l~~~l~~~g~~~~~~~~~ 133 (276) T 2ogx_A 100 SLAPLA---ASEA-GQNGHILAAMLASEGVSYVEHPTV 133 (276) T ss_dssp HHHHHH---HHHH-HHHHHHHHHHHGGGTCCBCCHHHH T ss_pred HHHHHH---HHHH-HHHHHHHHHHHHHCCCCEEECCCC T ss_conf 899999---9999-999999999876459762632663 No 18 >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Probab=98.64 E-value=3.2e-07 Score=65.92 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=69.3 Q ss_pred CCHHHHHHHHHHHHC--CCEEEEEECHHHHCCH--HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH---HCCCCCE Q ss_conf 622899999999875--9889998675672474--68999999999985189717998457245788999---7089811 Q 537021.9.peg.3 10 AEILEQVLPFVQFYE--NETIVVKYGGHVMNCT--DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLE---KMGIKSK 82 (150) Q Consensus 10 a~~l~ea~pYi~~~r--~ktiVIK~GG~~l~d~--~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~---~~gi~~~ 82 (150) -|.|..+..-...|| -.+.|||+||+++.|+ +...+++++|+.++..+ ++|||||||+....+.+ +++.+ T Consensus 19 ~~~~~~~~~~~~~~~~~pdi~VIKiGGssi~D~~~~~~~~~v~~Ia~l~~~~-~iVIVhGgG~~a~~~~~~~~~l~~~-- 95 (270) T 2ogx_B 19 DPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNH-KLLIGTGAGTRARHLYSIAAGLGLP-- 95 (270) T ss_dssp CHHHHHHHHTSCCCCSSTTEEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTC-EEEEEECCCHHHHHHHHHHHHTTCC-- T ss_pred CCCCEEECCCCCCHHCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHCCCC-- T ss_conf 8541220235665001799489996005620876899999999999986699-9899989888999999998753998-- Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 5578346612489999999741668999999982899768778 Q 537021.9.peg.3 83 FENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGIC 125 (150) Q Consensus 83 ~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avgls 125 (150) +..++.......++....+.+.|.++|..++..+ T Consensus 96 ---------~~~~d~~~~~~~~~~a~ll~~~l~~~g~~~~~~~ 129 (270) T 2ogx_B 96 ---------AGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGA 129 (270) T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCSS T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC T ss_conf ---------3179999999999999999999887197213356 No 19 >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Probab=98.34 E-value=4.4e-06 Score=58.60 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=64.8 Q ss_pred CHHHHHHHHHHHHCCCEEEEEECHHHHC----CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC Q ss_conf 2289999999987598899986756724----746899999999998518971799845724578899970898115578 Q 537021.9.peg.3 11 EILEQVLPFVQFYENETIVVKYGGHVMN----CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG 86 (150) Q Consensus 11 ~~l~ea~pYi~~~r~ktiVIK~GG~~l~----d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G 86 (150) +.+-.++--+.+...+.||||+||+++. +.+...+++++|+.++. +.++|||||||..-...++.. T Consensus 5 ~~~~~~~~~~p~~~~~rIViKlGGs~lt~~~~~~~~i~~la~~I~~l~~-~~~~vIVvggG~~a~~~~~~~--------- 74 (244) T 2brx_A 5 HHHHHSSGLVPRGSHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVA--------- 74 (244) T ss_dssp --------------CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHH--------- T ss_pred CCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHCCHHHHH--------- T ss_conf 4455567887676646799996576528999998999999999999986-992899989786767758887--------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCC Q ss_conf 346612489999999741668999999-9828997 Q 537021.9.peg.3 87 LRITDQQTAEVVEMVLAGSINKKIVSL-INQTGTQ 120 (150) Q Consensus 87 ~RVTd~~tl~iv~~vL~G~vn~~lv~~-L~~~g~~ 120 (150) .+.+..+...-....+....|..+.+. |.+.+.+ T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (244) T 2brx_A 75 EKFNSSETFKDFIGIQITRANAMLLIAALREKAYP 109 (244) T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 76554267899999999999999999998742165 No 20 >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Probab=98.28 E-value=9.6e-06 Score=56.46 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=57.1 Q ss_pred CEEEEEECHHHHCCH-----HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 889998675672474-----689999999999851897179984572457889997089811557834661248999999 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCT-----DLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEM 100 (150) Q Consensus 26 ktiVIK~GG~~l~d~-----~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~ 100 (150) |++|||+||+++.++ +...+++++|+.+.. |.++||||||+ +..-...+++..+ +..+++.+..+-+ T Consensus 2 krIViKlGGs~it~k~~~~~~~i~~l~~~i~~l~~-~~~~vIV~~Ga--~s~g~~~~~~~~~-----~~~~~~~~~~~g~ 73 (251) T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLME-KYEVILVTSAA--ISAGHTKLDIDRK-----NLINKQVLAAIGQ 73 (251) T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHH-HSEEEEEECCH--HHHHHHHCCCCSS-----SHHHHHHHHHHHH T ss_pred CEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCH--HHCCCCCCCCCCC-----CHHHHHHHHHHHH T ss_conf 87999956577708999389999999999999977-98499998985--7555455666753-----1023568898727 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 97416689999999828997687 Q 537021.9.peg.3 101 VLAGSINKKIVSLINQTGTQAIG 123 (150) Q Consensus 101 vL~G~vn~~lv~~L~~~g~~avg 123 (150) . ..+..+...|...|..+.. T Consensus 74 ~---~~~~~~~~~l~~~~~~~~~ 93 (251) T 2ako_A 74 P---FLISVYNELLAKFNKLGGQ 93 (251) T ss_dssp H---HHHHHHHHHHGGGTCCEEE T ss_pred H---HHHHHHHHHHHHCCCCCEE T ss_conf 9---9999999985340543236 No 21 >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Probab=98.23 E-value=3e-05 Score=53.25 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=40.1 Q ss_pred CEEEEEECHHHHC------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 8899986756724------7468999999999985189717998457245 Q 537021.9.peg.3 26 ETIVVKYGGHVMN------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQ 69 (150) Q Consensus 26 ktiVIK~GG~~l~------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~q 69 (150) |.+|||+||+++. |++....++++|+.++..|.+++||||||.. T Consensus 51 kRIVIKiGgs~lt~~~~~ld~~~i~~ia~~I~~l~~~G~eVilVssGg~~ 100 (281) T 3nwy_A 51 SRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF 100 (281) T ss_dssp SEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC T ss_pred CEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHH T ss_conf 87999988787139999919999999999999999779959999516443 No 22 >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Probab=98.19 E-value=3.4e-05 Score=52.93 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=40.8 Q ss_pred CEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH Q ss_conf 8899986756724-------7468999999999985189717998457245788 Q 537021.9.peg.3 26 ETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGA 72 (150) Q Consensus 26 ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~ 72 (150) |.+|||+||+++. |++.+.+++++|+.++..|.++|||||||...-. T Consensus 13 kRIViKiGGs~l~~~~~~~~~~~~i~~ia~~I~~l~~~g~~viIV~sGg~~~~~ 66 (255) T 2jjx_A 13 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG 66 (255) T ss_dssp SEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCH T ss_pred CEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 879999780131389998869999999999999999689989999778754564 No 23 >3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric regulation, ATP-binding, cytoplasm kinase, nucleotide-binding; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Probab=98.11 E-value=3.8e-05 Score=52.66 Aligned_cols=97 Identities=9% Similarity=0.129 Sum_probs=59.9 Q ss_pred HHCCCEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHH Q ss_conf 87598899986756724-------74689999999999851897179984572457889997089811557834661248 Q 537021.9.peg.3 22 FYENETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQT 94 (150) Q Consensus 22 ~~r~ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~t 94 (150) +.+-|.||||+||+.+. |.+...+++++|+.++..|.++||||||+.... .-.....+.+-.+... T Consensus 6 ~~~~kRIViKiGgs~l~~~~~~~i~~~~i~~ia~~I~~l~~~G~~viiVssG~~~~~-------~~~~~~~~~~~~~~~~ 78 (243) T 3ek6_A 6 ELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFR-------GAGLAASGMDRVTGDH 78 (243) T ss_dssp GCSCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSC-------STTTSCSSSCHHHHHH T ss_pred CCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH-------HHHHHCCCCCCCHHHH T ss_conf 577777999977000137999885999999999999999977987999953501110-------4554036877672999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 9999999741668999999982899768778655 Q 537021.9.peg.3 95 AEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 (150) Q Consensus 95 l~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~d 128 (150) +..... ..........+...+..+..++..+ T Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (243) T 3ek6_A 79 MGMLAT---VINALAMQDALEKLGAKVRVMSAIK 109 (243) T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCCEEEEESSC T ss_pred HHHHHH---HHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 999999---9999999999996597526631000 No 24 >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Probab=98.00 E-value=0.00011 Score=49.75 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=58.3 Q ss_pred CEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH Q ss_conf 8899986756724-------746899999999998518971799845724578899970898115578346612489999 Q 537021.9.peg.3 26 ETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVV 98 (150) Q Consensus 26 ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv 98 (150) |.||||+||+++. |.+.+.+++++|+.+...|..+++|+||+...-...... .+. ......... T Consensus 8 kRIVIKiGgs~l~~~~~~~ld~~~i~~ia~~I~~l~~~g~~vivV~gG~~~~~~~~~~~-------~~~--~~~~~~~~~ 78 (252) T 1z9d_A 8 QRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAAD-------AGM--DRVQADYTG 78 (252) T ss_dssp SEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-------HTC--CHHHHHHHH T ss_pred CEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHC-------CCC--CCHHHHHHH T ss_conf 88999977024208999986999999999999999967998999979974545313302-------577--515999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 999741668999999982899768778655 Q 537021.9.peg.3 99 EMVLAGSINKKIVSLINQTGTQAIGICGKD 128 (150) Q Consensus 99 ~~vL~G~vn~~lv~~L~~~g~~avglsg~d 128 (150) +......+......+...++.+..+...+ T Consensus 79 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (252) T 1z9d_A 79 -MLGTVMNALVMADSLQHYGVDTRVQTAIP 107 (252) T ss_dssp -HHHHHHHHHHHHHHHHTTTCCEEEEESSC T ss_pred -HHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf -99999999999999986797512677766 No 25 >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Probab=97.98 E-value=0.00022 Score=47.74 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=59.9 Q ss_pred HHHCCCEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHH Q ss_conf 987598899986756724-------7468999999999985189717998457245788999708981155783466124 Q 537021.9.peg.3 21 QFYENETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQ 93 (150) Q Consensus 21 ~~~r~ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~ 93 (150) ++.|-|.+|||+||+.+. |.+...+++++|+.|+..|..+++|+||+..-.......... +.. T Consensus 3 ~~~k~krIViKiGGs~l~~~~~~~i~~~~i~~ia~~I~~l~~~g~~vivVssGa~~~~~~~~~~~~~----------~~~ 72 (239) T 1ybd_A 3 QQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSM----------DRA 72 (239) T ss_dssp -CCSCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTS----------CHH T ss_pred CCCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCC----------CCH T ss_conf 6664776999977212117999886999999999999999977997999967875566303330478----------743 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 89999999741668999999982899768778 Q 537021.9.peg.3 94 TAEVVEMVLAGSINKKIVSLINQTGTQAIGIC 125 (150) Q Consensus 94 tl~iv~~vL~G~vn~~lv~~L~~~g~~avgls 125 (150) .............+......+...+..+.... T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (239) T 1ybd_A 73 TADYMGMMATVMNALALKDAFETLGIKARVQS 104 (239) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 79999999999999999999987687567401 No 26 >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Probab=97.85 E-value=3.4e-05 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=44.4 Q ss_pred HHHHHH-CCCEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCC Q ss_conf 999987-598899986756724-------74689999999999851897179984572457889997089 Q 537021.9.peg.3 18 PFVQFY-ENETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGI 79 (150) Q Consensus 18 pYi~~~-r~ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi 79 (150) |+-+.. +-|.||||+||+++. |.+.+.+++++|+.++..|..+|+|+||...-.......+. T Consensus 16 p~~~~m~k~krIVIKiGGS~L~~~~~~~i~~~~l~~ia~~I~~l~~~g~~vivvsgGa~~~g~~~~~~~~ 85 (256) T 2va1_A 16 PRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDM 85 (256) T ss_dssp -------CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHHHHHTTC T ss_pred CCCCCCCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHCCC T ss_conf 7872010168799997712433899998599999999999999984990899977886555511330477 No 27 >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Probab=97.81 E-value=4.2e-05 Score=52.36 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=41.3 Q ss_pred EEEEEECHHHHC--CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH---HHHHCCCC Q ss_conf 899986756724--7468999999999985189717998457245788---99970898 Q 537021.9.peg.3 27 TIVVKYGGHVMN--CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGA---VLEKMGIK 80 (150) Q Consensus 27 tiVIK~GG~~l~--d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~---~l~~~gi~ 80 (150) .+|||+||+.+. +.+....+++.|+.|+..|.++|||||||..... ..++.+++ T Consensus 2 riViKiGgs~l~~~~~~~i~~l~~~i~~l~~~g~~vviV~ggG~~ar~~~~~~~~~~~~ 60 (226) T 2j4j_A 2 NIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIG 60 (226) T ss_dssp EEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCC T ss_pred EEEEEECCCEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCC T ss_conf 69999643321899959999999999999978997999986865443366540116989 No 28 >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Probab=97.65 E-value=9.6e-05 Score=50.04 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=39.4 Q ss_pred CEEEEEECHHHHC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH Q ss_conf 8899986756724-------74689999999999851897179984572457 Q 537021.9.peg.3 26 ETIVVKYGGHVMN-------CTDLSKDFVNDIALLKKSNITPVIVHGGGPQI 70 (150) Q Consensus 26 ktiVIK~GG~~l~-------d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI 70 (150) |.+|||+||+++. |++...+++++|+.|+..|.++++|++|+-.. T Consensus 9 krIViKiGgs~l~~~~~~~i~~~~l~~ia~~I~~l~~~g~~vviVssGa~~~ 60 (247) T 2a1f_A 9 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLF 60 (247) T ss_dssp SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTC T ss_pred CEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 8799997701441799987599999999999999996799799993466441 No 29 >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.73.1.3 Probab=97.17 E-value=0.00059 Score=44.99 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=37.3 Q ss_pred EEEEEECHHHHC-CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 899986756724-74689999999999851897179984572457889 Q 537021.9.peg.3 27 TIVVKYGGHVMN-CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAV 73 (150) Q Consensus 27 tiVIK~GG~~l~-d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~ 73 (150) .+|||+||+++. +++....++++|+.++.-| +.+||||||...... T Consensus 2 rIViKiGgS~l~~~~~~i~~la~~i~~l~~~~-~~viVvggG~~ar~~ 48 (219) T 2ij9_A 2 KVVLSLGGSVLSNESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREY 48 (219) T ss_dssp EEEEEECSSTTTTCHHHHHHHHHHHHHHHHHS-EEEEEECCHHHHHHH T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHH T ss_conf 79999530033886799999999999998499-099998975888899 No 30 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Probab=97.09 E-value=0.019 Score=35.35 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=45.4 Q ss_pred CCCEEEEEECHHHHCC------HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCC Q ss_conf 5988999867567247------468999999999985189717998457245788999708981 Q 537021.9.peg.3 24 ENETIVVKYGGHVMNC------TDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 (150) Q Consensus 24 r~ktiVIK~GG~~l~d------~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~ 81 (150) .-|.+|||+|.+++.+ ...+.+++++|+.|+..|.++|||+-|. |..-++.++++. T Consensus 3 ~~kriViKiGss~lt~~~~~l~~~~i~~l~~~i~~L~~~g~evilVsSGA--va~G~~~l~~~~ 64 (367) T 2j5v_A 3 DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGREHLGYPE 64 (367) T ss_dssp CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHHHHHTSCC T ss_pred CCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHHHHCCCC T ss_conf 88789999067636894998589999999999999997899899987536--985678629986 No 31 >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Probab=95.84 E-value=0.09 Score=30.98 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=62.6 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 88999867567247468999999999985189717998457245788999708981155783466124899999997416 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGS 105 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~ 105 (150) +++|.||||+-+.|++.++++++-|..-...|.++++|.-+---++..|-++.-. .+ ...+++.++.+.. ..-. T Consensus 2 ~~iV~KFGGtSva~~~~i~~v~~iI~~~~~~~~~~vvVvSA~~g~Td~Ll~l~~~---~~--~~~~~~e~d~ils-~GE~ 75 (421) T 3ab4_A 2 ALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAA---VN--PVPPAREMDMLLT-AGER 75 (421) T ss_dssp CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHH---HC--SSCCHHHHHHHHH-HHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH---CC--CCCCHHHHHHHHH-HHHH T ss_conf 7399978930179889999999999646754998899972898549999999997---28--9999799999999-8599 Q ss_pred HHHHH-HHHHHHCCCCEEEEEEEECCEEE Q ss_conf 68999-99998289976877865589899 Q 537021.9.peg.3 106 INKKI-VSLINQTGTQAIGICGKDGNMVF 133 (150) Q Consensus 106 vn~~l-v~~L~~~g~~avglsg~dg~li~ 133 (150) +...| ...|+..|++|..+.+.+-.++. T Consensus 76 lSa~lla~~L~~~g~~a~~~~~~~~~i~~ 104 (421) T 3ab4_A 76 ISNALVAMAIESLGAEAQSFTGSQAGVLT 104 (421) T ss_dssp HHHHHHHHHHHHTTCCEEECCCC------ T ss_pred HHHHHHHHHHHHCCCCCEECCHHHCCEEE T ss_conf 99999999998718753780136661773 No 32 >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Probab=95.81 E-value=0.12 Score=30.25 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=61.0 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 88999867567247468999999999985189717998457245788999708981155783466124899999997416 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGS 105 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~ 105 (150) +++|-||||+-+.+++.+.++++-|......|.++++|.-+--.++..|-++.-+ ..+. -+++.++.+.. .|+ T Consensus 2 ~~iV~KFGGtSv~~~~~~~~v~~~i~~~~~~~~~~~vVvSA~~~~Td~L~~l~~~--~~~~---~~~~~~d~i~s--~GE 74 (600) T 3l76_A 2 ALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQ--ISPN---PCRREMDMLLS--TGE 74 (600) T ss_dssp CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHH--HCSS---CCHHHHHHHHH--HHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HCCC---CCHHHHHHHHH--HHH T ss_conf 7399957942379899999999999999866999899972999948999999997--6689---99899999997--329 Q ss_pred -HHHH-HHHHHHHCCCCEEEEEEEE Q ss_conf -6899-9999982899768778655 Q 537021.9.peg.3 106 -INKK-IVSLINQTGTQAIGICGKD 128 (150) Q Consensus 106 -vn~~-lv~~L~~~g~~avglsg~d 128 (150) +... +...|+..|.+|.-+.+.+ T Consensus 75 ~~s~~l~a~~l~~~g~~a~~~~~~~ 99 (600) T 3l76_A 75 QVSIALLSLALQEIDQPAISLTGAQ 99 (600) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGG T ss_pred HHHHHHHHHHHHHCCCCEEECCHHH T ss_conf 9999999999997899819986778 No 33 >1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A Probab=91.48 E-value=0.65 Score=25.48 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=68.8 Q ss_pred HCCCHHHHH-HHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC Q ss_conf 206228999-9999987598899986756724746899999999998518971799845724578899970898115578 Q 537021.9.peg.3 8 FQAEILEQV-LPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG 86 (150) Q Consensus 8 ~~a~~l~ea-~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G 86 (150) ..|.-|++. .+++.+..-+.+|+-+.+--..|......+++-...++..|.+ +.+.|-.|++-+.++..|+..-+ T Consensus 24 ~~a~~l~~~l~~~~~~~~~~~vilDls~v~~idssgl~~L~~~~~~~~~~~~~-l~l~~~~~~v~~~l~~~gl~~~~--- 99 (117) T 1h4x_A 24 HAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGR-TILLNPSPTMRKVFQFSGLGPWM--- 99 (117) T ss_dssp HHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCE-EEEESCCHHHHHHHHHTTCGGGE--- T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHCCCCEEE--- T ss_conf 89999999999999539996899997268764769999999999999868998-99996998999999983998489--- Q ss_pred CCCCCHHHHHHHHHHHHH Q ss_conf 346612489999999741 Q 537021.9.peg.3 87 LRITDQQTAEVVEMVLAG 104 (150) Q Consensus 87 ~RVTd~~tl~iv~~vL~G 104 (150) .--|.+++++-++.++.| T Consensus 100 ~~~t~eeAl~~l~g~~~~ 117 (117) T 1h4x_A 100 MDATEEEAIDRVRGIVNG 117 (117) T ss_dssp ECSCHHHHHHHTC----- T ss_pred EECCHHHHHHHHHHHHCC T ss_conf 679999999998766576 No 34 >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} Probab=91.42 E-value=0.82 Score=24.84 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=62.0 Q ss_pred HHHHCCCHHHHH-HHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCC Q ss_conf 232206228999-99999875988999867567247468999999999985189717998457245788999708981 Q 537021.9.peg.3 5 IYQFQAEILEQV-LPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 (150) Q Consensus 5 ~~~~~a~~l~ea-~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~ 81 (150) +....++-|.|. ++++.....+.+|+-+.|--..|......|.+-...++..|.+++++ |-.|++-+.+...|+.. T Consensus 22 Ld~~~~~~l~~~ll~~i~~~~~~~vilD~s~v~~idssgl~~l~~~~~~~~~~g~~~~l~-g~~p~v~~~l~~~g~d~ 98 (123) T 2vy9_A 22 LHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLT-GIKPAVAITLTEMGLDL 98 (123) T ss_dssp SCSHHHHHHHHHHHHHHTTSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEE-CCCHHHHHHHHHTTCCS T ss_pred ECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHCCCC T ss_conf 878999999999999998479979999856997451999999999999999769989999-38999999999959986 No 35 >3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A* Probab=88.97 E-value=1.2 Score=23.89 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=39.1 Q ss_pred EEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC Q ss_conf 899986756724746899999999998518971799845724578899970 Q 537021.9.peg.3 27 TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77 (150) Q Consensus 27 tiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~ 77 (150) +-|.||||+-+.|.+.++++++-|......+.++|+|.-+=.-++..|-++ T Consensus 2 ~kV~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~~vvVvSA~~g~Td~L~~~ 52 (473) T 3c1m_A 2 TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEI 52 (473) T ss_dssp CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHH T ss_pred CEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH T ss_conf 879984832026799999999998557646787776576887850699999 No 36 >3men_A Acetylpolyamine aminohydrolase; seattle structural genomics center for infectious disease (ssgcid), histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Probab=85.21 E-value=2.1 Score=22.19 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=47.0 Q ss_pred CHHHHHHHHHHHHCCCEEEEEECHHHHCCHHH------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 22899999999875988999867567247468------9999999999851897179984572457889 Q 537021.9.peg.3 11 EILEQVLPFVQFYENETIVVKYGGHVMNCTDL------SKDFVNDIALLKKSNITPVIVHGGGPQIGAV 73 (150) Q Consensus 11 ~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l------~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~ 73 (150) ..|.+++|.+.+|+=+.+||-.|=++..++.+ .+.+..-...+..++.++|+|.+||-..+.+ T Consensus 278 ~~~~~~l~~l~~f~Pdli~vsaGfD~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l 346 (362) T 3men_A 278 ERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESL 346 (362) T ss_dssp HHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCCCCHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 999998899996699999997970356889888842099999999999986599889997988987899 No 37 >3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes} Probab=80.68 E-value=3.2 Score=21.06 Aligned_cols=97 Identities=7% Similarity=0.056 Sum_probs=68.0 Q ss_pred HHHHCCCHHHHHHHHHHHH------CCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC Q ss_conf 2322062289999999987------5988999867567247468999999999985189717998457245788999708 Q 537021.9.peg.3 5 IYQFQAEILEQVLPFVQFY------ENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMG 78 (150) Q Consensus 5 ~~~~~a~~l~ea~pYi~~~------r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~g 78 (150) +++..++++=-+++++.+. .-+.+|+-+.+--..|......|.+=+..++..|.+++++ |..|++-+.|++.| T Consensus 26 v~rl~G~L~F~~a~~~~~~l~~~~~~~~~vIlD~~~v~~iDssg~~~L~~l~~~~~~~g~~l~l~-~~~~~v~~~l~~~g 104 (135) T 3oir_A 26 IYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLS-GVSDRLYGALNRFG 104 (135) T ss_dssp EEECCSSBSHHHHHHHTTHHHHCSSCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEE-SCCHHHHHHHHHTT T ss_pred EEEECCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHCC T ss_conf 99962188615199999999973479999999750797547889999999999998579999999-79989999999869 Q ss_pred CCCEEEC-CCCCCCHHHHHHHHHHH Q ss_conf 9811557-83466124899999997 Q 537021.9.peg.3 79 IKSKFEN-GLRITDQQTAEVVEMVL 102 (150) Q Consensus 79 i~~~~v~-G~RVTd~~tl~iv~~vL 102 (150) +-..+-. .+--|-.++++.++..+ T Consensus 105 ~~~~~~~~~if~t~~~Al~~a~~~~ 129 (135) T 3oir_A 105 FIEALGEERVFDHIDKALAYAKLLV 129 (135) T ss_dssp HHHHHCGGGBCSSHHHHHHHHHHHH T ss_pred CHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 9233287724499999999999986 No 38 >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Probab=80.12 E-value=3.3 Score=20.95 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=29.9 Q ss_pred CCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC Q ss_conf 98899986756724746899999999998518971799845724578899970 Q 537021.9.peg.3 25 NETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77 (150) Q Consensus 25 ~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~ 77 (150) .|.+|.||||+-+.|.+.+.++++-| ... +-++|+|.-+---++..|-++ T Consensus 2 ~~~iV~KFGGtSv~~~~~i~~v~~ii--~~~-~~~~vVVvSA~~g~Td~L~~~ 51 (449) T 2j0w_A 2 SEIVVSKFGGTSVADFDAMNRSADIV--LSD-ANVRLVVLSASAGITNLLVAL 51 (449) T ss_dssp -CCEEEEECSGGGSSHHHHHHHHHHH--TSC-TTEEEEEECCCTTHHHHHHHH T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHH--HCC-CCCEEEEEECCCCCHHHHHHH T ss_conf 97099963803079899999999999--726-997599994899977999999 No 39 >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, allostery, S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Probab=79.34 E-value=3.5 Score=20.79 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=31.7 Q ss_pred HHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH Q ss_conf 87598899986756724746899999999998518971799845724578899 Q 537021.9.peg.3 22 FYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74 (150) Q Consensus 22 ~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l 74 (150) .-++-+.|.||||+-+.|.+.++++++-|.. + ...++|+|.-+=--++..| T Consensus 23 ~~~~~~~V~KFGGTSv~~~~~i~~v~~iI~~-~-~~~~~vVVVSA~gg~Td~L 73 (510) T 2cdq_A 23 DEKGITCVMKFGGSSVASAERMKEVADLILT-F-PEESPVIVLSAMGKTTNNL 73 (510) T ss_dssp --CCCCEEEEECTGGGSSHHHHHHHHHHHHH-C-TTCCEEEEECCSTTHHHHH T ss_pred CCCCCEEEEEECHHHCCCHHHHHHHHHHHHC-C-CCCCCEEEEECCCCCHHHH T ss_conf 4369739997282331889999999999963-6-9999499995999974799 No 40 >2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* Probab=76.28 E-value=4.3 Score=20.23 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=60.4 Q ss_pred HHHHCCCHHHHHH-HHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEE Q ss_conf 2322062289999-999987598899986756724746899999999998518971799845724578899970898115 Q 537021.9.peg.3 5 IYQFQAEILEQVL-PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF 83 (150) Q Consensus 5 ~~~~~a~~l~ea~-pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~ 83 (150) +....|+.|++.+ ..+.+...+.+|+-+.+--..|......|..-...++..|.+++++ |-.|++-+.++..|+..-+ T Consensus 31 Ld~~~a~~f~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~ 109 (125) T 2ka5_A 31 LNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALV-SPNEKVERVLSLTNLDRIV 109 (125) T ss_dssp CSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEE-CCCHHHHHHHHHTTSTTTS T ss_pred EEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHCCCCCEE T ss_conf 868899999999999999669988999847997277689999999999999779999995-7998999999981998602 No 41 >1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Probab=75.33 E-value=4.3 Score=20.24 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHH-HHHHCCCCEEEEECCCHHH Q ss_conf 899999999875988999867567247468999999999-9851897179984572457 Q 537021.9.peg.3 13 LEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIA-LLKKSNITPVIVHGGGPQI 70 (150) Q Consensus 13 l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~-ll~~~G~k~ViVHGgg~qI 70 (150) |++...-+.+.+-+++.| |||+-....+..-..+..+. +|...|+. ||.|||+=+ T Consensus 25 ~~~~~~~l~~~~~p~V~V-fcgs~~~~~~~~~~~A~~LG~~LA~~g~~--lV~GGg~Gl 80 (217) T 1wek_A 25 FVEGFETLSELQVPLVSV-FGSARFGEGHPAYEAGYRLGRALAEAGFG--VVTGGGPGV 80 (217) T ss_dssp HHHHHHHHHHCCSCEEEE-ECCSSCCTTSHHHHHHHHHHHHHHHHTCE--EEECSCSHH T ss_pred HHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHHHHHHHHHHHHHHCCCE--EEECCCHHH T ss_conf 999999998569982999-89888998998999999999999987999--997986789 No 42 >3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, acetylation, arginase fold, HDAC8, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* Probab=73.22 E-value=5.1 Score=19.74 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=47.3 Q ss_pred CHHHHH-HHHHHHHCCCEEEEEECHHHHCCHH-----H-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH Q ss_conf 228999-9999987598899986756724746-----8-99999999998518971799845724578899 Q 537021.9.peg.3 11 EILEQV-LPFVQFYENETIVVKYGGHVMNCTD-----L-SKDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74 (150) Q Consensus 11 ~~l~ea-~pYi~~~r~ktiVIK~GG~~l~d~~-----l-~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l 74 (150) .+|+++ .|.++.|+=+.||+-.|-++..++. + .+.+..-...+...+.++++|.|||-.++... T Consensus 242 ~~~~~il~~~~~~f~Pd~IvvsaG~Da~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~l~~~eGGY~~~~~a 312 (388) T 3ew8_A 242 QICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTA 312 (388) T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 99999999999971989899989804778998878230899999999999855998799978778878999 No 43 >3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Probab=67.35 E-value=6.8 Score=18.93 Aligned_cols=63 Identities=21% Similarity=0.457 Sum_probs=46.7 Q ss_pred CHHHHH-HHHHHHHCCCEEEEEECHHHHCCH-----HH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 228999-999998759889998675672474-----68-9999999999851897179984572457889 Q 537021.9.peg.3 11 EILEQV-LPFVQFYENETIVVKYGGHVMNCT-----DL-SKDFVNDIALLKKSNITPVIVHGGGPQIGAV 73 (150) Q Consensus 11 ~~l~ea-~pYi~~~r~ktiVIK~GG~~l~d~-----~l-~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~ 73 (150) .+|++. .|.++.|+=..+||-.|-++..++ ++ .+.+.+-+..++.++.++++|.|||-.++.. T Consensus 233 ~~~~~~l~p~~~~f~PdlIvvsaG~Da~~~Dplg~~~lt~~~~~~~~~~l~~~~~p~v~vleGGY~~~~l 302 (367) T 3max_A 233 QIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNV 302 (367) T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 9999989999986598989997972035888888810589999999999982899989997987875799 No 44 >3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor} Probab=62.40 E-value=8.5 Score=18.34 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=58.0 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECC-CC Q ss_conf 62289999999987598899986756724746899999999998518971799845724578899970898115578-34 Q 537021.9.peg.3 10 AEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG-LR 88 (150) Q Consensus 10 a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G-~R 88 (150) |..|++.+.-+.. ..+.+|+-+.+.-..|......|.+-+..++..|..++++ |..+++-+.|++.|+...+-.. +- T Consensus 35 a~~~~~~l~~~~~-~~~~vIlD~~~v~~iD~sg~~~l~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~i~~~~if 112 (130) T 3mgl_A 35 AETFERVMGSIQE-TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLIS-GANSRVSQKLVKAGIVKLVGEQNVY 112 (130) T ss_dssp HHHHHHHHHHSSS-CCSEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTCEEEEE-CCCHHHHHHHHHTTHHHHHCGGGEE T ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHCCCHHHCCCCCCC T ss_conf 9999999997247-9999999773798768689999999999999779989998-2888999999986996554966214 Q ss_pred CCCHHHHHHHH Q ss_conf 66124899999 Q 537021.9.peg.3 89 ITDQQTAEVVE 99 (150) Q Consensus 89 VTd~~tl~iv~ 99 (150) -|-.++++.+. T Consensus 113 ~s~~~Al~~a~ 123 (130) T 3mgl_A 113 PVFEGALSAAL 123 (130) T ss_dssp SSHHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 99999999999 No 45 >3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} Probab=62.37 E-value=2.3 Score=21.92 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=53.1 Q ss_pred HCCCEEEEEECHHHHCCH-HHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHCCCCCEEE--CCCCCCCHHHHHHH Q ss_conf 759889998675672474-68999999999985189717998457-245788999708981155--78346612489999 Q 537021.9.peg.3 23 YENETIVVKYGGHVMNCT-DLSKDFVNDIALLKKSNITPVIVHGG-GPQIGAVLEKMGIKSKFE--NGLRITDQQTAEVV 98 (150) Q Consensus 23 ~r~ktiVIK~GG~~l~d~-~l~~~~~~dI~ll~~~G~k~ViVHGg-g~qI~~~l~~~gi~~~~v--~G~RVTd~~tl~iv 98 (150) .+-|.++.=+.|..+.+. .+.+...+-|..|+..|++++++-|- -+.+...++.++++..++ +|-.+.+...-.+. T Consensus 4 m~~KLi~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~v~~~TGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~ 83 (290) T 3dnp_A 4 MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFF 83 (290) T ss_dssp --CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSE T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCEEEECCCCEEE T ss_conf 88678999888885289593699999999999978998999889988999999998399860895598369855742321 Q ss_pred HHHHHHHHHHHHHHHHHHCCC Q ss_conf 999741668999999982899 Q 537021.9.peg.3 99 EMVLAGSINKKIVSLINQTGT 119 (150) Q Consensus 99 ~~vL~G~vn~~lv~~L~~~g~ 119 (150) ..-+.......+...+...+. T Consensus 84 ~~~l~~~~~~~i~~~~~~~~~ 104 (290) T 3dnp_A 84 EKRISDDHTFNIVQVLESYQC 104 (290) T ss_dssp ECCCCHHHHHHHHHHHHTSSC T ss_pred CCCCCHHHHHHHHHHHHHCCC T ss_conf 104788999999999997298 No 46 >1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10 Probab=59.92 E-value=3.6 Score=20.75 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=39.4 Q ss_pred CEEEEEECHHHHCC-HHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHCCCCCEEE--CCCCCCC Q ss_conf 88999867567247-46899999999998518971799845724-5788999708981155--7834661 Q 537021.9.peg.3 26 ETIVVKYGGHVMNC-TDLSKDFVNDIALLKKSNITPVIVHGGGP-QIGAVLEKMGIKSKFE--NGLRITD 91 (150) Q Consensus 26 ktiVIK~GG~~l~d-~~l~~~~~~dI~ll~~~G~k~ViVHGgg~-qI~~~l~~~gi~~~~v--~G~RVTd 91 (150) |.++.=+.|..+.+ ....+...+-|..|+..|++++++-|=.. .+...++++++...++ +|-.+.+ T Consensus 5 Kli~~DlDGTLl~~~~~i~~~~~~~i~~l~~~Gi~~~i~TGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~ 74 (288) T 1nrw_A 5 KLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHD 74 (288) T ss_dssp CEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEEC T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEC T ss_conf 5999977877508979509999999999997899999997999899999999819981399668327981 No 47 >1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A Probab=57.72 E-value=9.9 Score=17.89 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.6 Q ss_pred ECHHHHCCHHHHHHHHHHHH-HHHHCCCC-EEEE--ECCCHH Q ss_conf 67567247468999999999-98518971-7998--457245 Q 537021.9.peg.3 32 YGGHVMNCTDLSKDFVNDIA-LLKKSNIT-PVIV--HGGGPQ 69 (150) Q Consensus 32 ~GG~~l~d~~l~~~~~~dI~-ll~~~G~k-~ViV--HGgg~q 69 (150) ++|.+-.++..+.+++.||. -|...|.+ +|+| |||... T Consensus 84 fPGTisl~~~t~~~~l~di~~sl~~~Gfr~ivivNgHgGN~~ 125 (260) T 1v7z_A 84 FPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSM 125 (260) T ss_dssp SSSCBCBCHHHHHHHHHHHHHHHHHHTCCEEEEEECSGGGHH T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH T ss_conf 772599787889999999999999808965999716876407 No 48 >1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A Probab=56.66 E-value=11 Score=17.71 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=59.3 Q ss_pred HHHCCCHHHHHH-HHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCE Q ss_conf 322062289999-99998759889998675672474689999999999851897179984572457889997089811 Q 537021.9.peg.3 6 YQFQAEILEQVL-PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSK 82 (150) Q Consensus 6 ~~~~a~~l~ea~-pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~ 82 (150) ....|+.|++.. +++.....+.+|+-+.+--..|......|+.-...++..|.++.+ .|-.|++-+.++..|+... T Consensus 24 ~~~~a~~l~~~l~~~~~~~~~~~vvlD~~~v~~iDssgl~~L~~~~~~~~~~g~~l~l-~~~~~~v~~~l~~~gl~~~ 100 (110) T 1sbo_A 24 DAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFIL-SSLKESISRILKLTHLDKI 100 (110) T ss_dssp STTTTTHHHHHHHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEE-ESCCHHHHHHHHHTTCGGG T ss_pred EHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCCE T ss_conf 9689899999999998538997899994699873627999999999999978998999-9299899999998499864 No 49 >3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A Probab=55.03 E-value=5 Score=19.81 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=53.5 Q ss_pred HHHHHCCCHHHHHHHHHHHH-----CCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC Q ss_conf 02322062289999999987-----5988999867567247468999999999985189717998457245788999708 Q 537021.9.peg.3 4 KIYQFQAEILEQVLPFVQFY-----ENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMG 78 (150) Q Consensus 4 ~~~~~~a~~l~ea~pYi~~~-----r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~g 78 (150) +++...+++|=-+..++.+. .-+++|+-+.+.-..|......+.+=+..++..|.+++++ |-.|++-+.|+++| T Consensus 18 ~vy~i~G~LfFg~a~~~~~~~~~~~~~~~vild~~~v~~iD~Sa~~aL~~~~~~~~~~g~~l~l~-gl~~~v~~~l~r~G 96 (99) T 3oiz_A 18 RIYRVEGQLFYASVEDFMAAFDFREALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIV-GMNEASETMVDRLA 96 (99) T ss_dssp EEEEEEEEECGGGHHHHHHTCCTTSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEE-SHHHHHTTCC---- T ss_pred EEEEEECEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHC T ss_conf 99999478842409999999853379999999847897237799999999999999579999998-29989999999826 Q ss_pred C Q ss_conf 9 Q 537021.9.peg.3 79 I 79 (150) Q Consensus 79 i 79 (150) + T Consensus 97 l 97 (99) T 3oiz_A 97 I 97 (99) T ss_dssp - T ss_pred C T ss_conf 7 No 50 >3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Probab=54.92 E-value=11 Score=17.53 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=35.7 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHCCCCC Q ss_conf 88999867567247468999999999985189717998457----245788999708981 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG----GPQIGAVLEKMGIKS 81 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGg----g~qI~~~l~~~gi~~ 81 (150) |.++.=+.|.++.+....+...+-+..|+..|++++++-.. ..++-+.|..+|++. T Consensus 6 kaviFDlDGTL~~~~~~I~~a~~~l~~L~~~g~~~~~~TN~s~~s~~~~~~~l~~lg~~~ 65 (264) T 3epr_A 6 KGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVET 65 (264) T ss_dssp CEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCC T ss_pred CEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCC T ss_conf 999991888428799928379999999998799789990899899999999998638977 No 51 >1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A Probab=53.79 E-value=12 Score=17.42 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=55.5 Q ss_pred CCCHHHHH-HHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEE Q ss_conf 06228999-9999987598899986756724746899999999998518971799845724578899970898115 Q 537021.9.peg.3 9 QAEILEQV-LPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF 83 (150) Q Consensus 9 ~a~~l~ea-~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~ 83 (150) .++-|++. .+++..-.-+.+|+-+.+--..|......+.+-...++..|.+++++ |-.|++.+.++..|+..-| T Consensus 26 ~~~~l~~~l~~~~~~~~~~~liiDl~~v~~idssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~ 100 (116) T 1th8_B 26 TAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVC-AVSPAVKRLFDMSGLFKII 100 (116) T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEE-SCCHHHHHHHHHHTGGGTS T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCEECHHHHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHCCCCCEE T ss_conf 99999999999997189969999956983516799999999999999589989999-6898999999983997726 No 52 >1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A Probab=53.41 E-value=6.9 Score=18.92 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=44.7 Q ss_pred CCEEEEEECHHHHCCHH--HHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHHHCCCCCEEE--CCCCCCCH Q ss_conf 98899986756724746--8999999999985189717998457245-788999708981155--78346612 Q 537021.9.peg.3 25 NETIVVKYGGHVMNCTD--LSKDFVNDIALLKKSNITPVIVHGGGPQ-IGAVLEKMGIKSKFE--NGLRITDQ 92 (150) Q Consensus 25 ~ktiVIK~GG~~l~d~~--l~~~~~~dI~ll~~~G~k~ViVHGgg~q-I~~~l~~~gi~~~~v--~G~RVTd~ 92 (150) -|.|+.=+.|.++.+.. ..+++.+.+..|+..|++++++-|-..+ +.+.+++++.+.-++ +|-++.++ T Consensus 3 iKli~~DlDGTL~~~~~~~~~~~~~~~l~~l~~~g~~v~i~TGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~ 75 (271) T 1rlm_A 3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEH 75 (271) T ss_dssp CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSSCHHHHGGGCTTTTTTSEEEEGGGTEEEET T ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCEEEEC T ss_conf 2199997776662799839979999999999977998999869988999999998287775894497099966 No 53 >1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18 Probab=50.59 E-value=13 Score=17.10 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=37.8 Q ss_pred CEEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEEECC----------------CHHHHHHHHHCCCC Q ss_conf 889998675672474-------68999999999985189717998457----------------24578899970898 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCT-------DLSKDFVNDIALLKKSNITPVIVHGG----------------GPQIGAVLEKMGIK 80 (150) Q Consensus 26 ktiVIK~GG~~l~d~-------~l~~~~~~dI~ll~~~G~k~ViVHGg----------------g~qI~~~l~~~gi~ 80 (150) |+|++-+.|.+...+ .-....++-+..|+..|.+++|.-+- .+..-++|++.|++ T Consensus 2 k~i~~DiDGTI~~~~~~~y~~~~P~~~~Ie~i~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gi~ 79 (126) T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP 79 (126) T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC T ss_pred CEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999994788628699999150795899999999999789989999777433457767776675899999999982998 No 54 >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A Probab=47.19 E-value=15 Score=16.76 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=16.5 Q ss_pred HHHCCCCCEEECC----CCCCCHHHHHHHHHHHHHHHH Q ss_conf 9970898115578----346612489999999741668 Q 537021.9.peg.3 74 LEKMGIKSKFENG----LRITDQQTAEVVEMVLAGSIN 107 (150) Q Consensus 74 l~~~gi~~~~v~G----~RVTd~~tl~iv~~vL~G~vn 107 (150) +...|.++.+++| +.||+++.|+.++..|.-.++ T Consensus 195 ~~~~g~kv~~v~~~~~n~kIttpeDl~~Ae~~L~~~~~ 232 (236) T 1i52_A 195 LEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH 232 (236) T ss_dssp HHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC--- T ss_pred HHHCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 99779965999758000488999999999999987765 No 55 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Probab=46.41 E-value=15 Score=16.68 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=41.0 Q ss_pred HHCCCEEEEEEC-------HHHHCCHHHHHHHHHHHHHHHHCCCC-EEEE-ECCCHH------------HHHHHHHCCCC Q ss_conf 875988999867-------56724746899999999998518971-7998-457245------------78899970898 Q 537021.9.peg.3 22 FYENETIVVKYG-------GHVMNCTDLSKDFVNDIALLKKSNIT-PVIV-HGGGPQ------------IGAVLEKMGIK 80 (150) Q Consensus 22 ~~r~ktiVIK~G-------G~~l~d~~l~~~~~~dI~ll~~~G~k-~ViV-HGgg~q------------I~~~l~~~gi~ 80 (150) .++||++.+-++ |.+. |..-+...+..|..|...|-+ +||. |=|+|. .+.+.+.++.+ T Consensus 12 d~~gK~VlvRvD~NvPi~~g~I~-Dd~RI~~~lpTI~~L~~~gak~VIL~SHlGRP~g~~~~~~SL~pva~~L~~~l~~~ 90 (415) T 1qpg_A 12 DLKDKRVFIRVDFNVPLDGKKIT-SNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGKD 90 (415) T ss_dssp CCTTCEEEEECCCCCCBSSSSBS-CCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSC T ss_pred CCCCCEEEEEECCCCCCCCCEEC-CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 86899899995266686399889-68899999999999998799889996168899998798768399999999987897 Q ss_pred CEEECC Q ss_conf 115578 Q 537021.9.peg.3 81 SKFENG 86 (150) Q Consensus 81 ~~~v~G 86 (150) ..|++. T Consensus 91 V~f~~d 96 (415) T 1qpg_A 91 VTFLND 96 (415) T ss_dssp CEEESC T ss_pred EEECCC T ss_conf 497067 No 56 >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Probab=46.40 E-value=15 Score=16.68 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=33.7 Q ss_pred CCHHHHHHHHHCCCCCEEECCC----CCCCHHHHHHHHHHHHHHHH Q ss_conf 7245788999708981155783----46612489999999741668 Q 537021.9.peg.3 66 GGPQIGAVLEKMGIKSKFENGL----RITDQQTAEVVEMVLAGSIN 107 (150) Q Consensus 66 gg~qI~~~l~~~gi~~~~v~G~----RVTd~~tl~iv~~vL~G~vn 107 (150) ..|..-+++++.||.+..+.|- |||-++.+..+..--.+++. T Consensus 12 ~sPaarkla~e~gidl~~I~gTG~~GRI~k~DV~~~i~~~~~~k~t 57 (64) T 2f60_K 12 LSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKIL 57 (64) T ss_dssp BCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCEEEHHHHHHHHHHCCCCCCC T ss_conf 2999999999949984332567999829599999999833457754 No 57 >3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural genomics consortium, TBSGC, tryptophan synthes 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase; 2.40A {Mycobacterium tuberculosis} Probab=44.10 E-value=17 Score=16.46 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=25.6 Q ss_pred CCHHHHHHHHHHHHCC-CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 6228999999998759-889998675672474689999999999851897179984572457889 Q 537021.9.peg.3 10 AEILEQVLPFVQFYEN-ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAV 73 (150) Q Consensus 10 a~~l~ea~pYi~~~r~-ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~ 73 (150) -++|.-++-.+.++.. +.+||-...+ . ..... ...+.++.+|.||..+-+.. T Consensus 35 kpli~~~l~~~~~~~~~~~iiVv~~~~-----~-~~~~~------~~~~~~~~~v~gg~~r~~s~ 87 (231) T 3okr_A 35 QTLIERAVDGLLDSGVVDTVVVAVPAD-----R-TDEAR------QILGHRAMIVAGGSNRTDTV 87 (231) T ss_dssp EEHHHHHHHHHHHTSCCCEEEEEECGG-----G-HHHHH------HHHGGGCEEEECCSSHHHHH T ss_pred EEHHHHHHHHHHHCCCCCEEEECCCHH-----H-HHHHH------HHCCCCEEEECCCCEEEHHH T ss_conf 689999999997437602685024056-----7-88764------10145137953884341668 No 58 >1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Probab=43.72 E-value=16 Score=16.50 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=35.0 Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEC--------CCHHHHHHHHHCCCCCEEECCC-CCCCHH Q ss_conf 756724746899999999998518971799845--------7245788999708981155783-466124 Q 537021.9.peg.3 33 GGHVMNCTDLSKDFVNDIALLKKSNITPVIVHG--------GGPQIGAVLEKMGIKSKFENGL-RITDQQ 93 (150) Q Consensus 33 GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHG--------gg~qI~~~l~~~gi~~~~v~G~-RVTd~~ 93 (150) ||-...+..+.+.-.+=......-|+++.+-|| |||.=.+. +..++.-++|. |+|-.- T Consensus 608 gG~laa~W~ly~Aq~~L~~v~~~~gV~l~lFHGRGGsvgRGGGP~~~ai---laqP~gtv~g~ir~TeQG 674 (970) T 1jqo_A 608 AGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAI---LSQPPDTINGSIRVTVQG 674 (970) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHH---HTSCTTSCTTEEEEEEEH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHH---HHCCCCCCCCCEEEEEEE T ss_conf 0088889999999999999999759749997178888899998267899---838998758766886312 No 59 >1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Probab=42.04 E-value=18 Score=16.26 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=43.3 Q ss_pred HHHHHH-HHHHHHCCCEEEEEECHHHHCCHHH------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH Q ss_conf 289999-9999875988999867567247468------99999999998518971799845724578899 Q 537021.9.peg.3 12 ILEQVL-PFVQFYENETIVVKYGGHVMNCTDL------SKDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74 (150) Q Consensus 12 ~l~ea~-pYi~~~r~ktiVIK~GG~~l~d~~l------~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l 74 (150) .|++.+ |-+.+|+=..++|-.|-++..++.+ .+.+..-...+..+..++|+|.|||-...... T Consensus 234 ~~~~~l~p~~~~f~PdlIlvsaGfDa~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l~ 303 (375) T 1c3p_A 234 ALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALA 303 (375) T ss_dssp HHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH T ss_conf 9999999999975999999979821356578667640899999999999984899799988878777999 No 60 >2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.06A {Sulfolobus tokodaii str} Probab=41.71 E-value=18 Score=16.23 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=56.0 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCC-EEECCCC Q ss_conf 622899999999875988999867567247468999999999985189717998457245788999708981-1557834 Q 537021.9.peg.3 10 AEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS-KFENGLR 88 (150) Q Consensus 10 a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~-~~v~G~R 88 (150) ...|+.+.-+++.+.+-.++|-+-|..+..-..-..+.+.|..|...|.++.+-. ..|+..|+++ .+.+|.+ T Consensus 14 ~~~L~n~~n~~~~~~~~~I~vV~~G~gv~~l~~~~~~~~~i~~L~~~gV~~~~C~-------~sl~~~~i~~~~l~~~v~ 86 (108) T 2pd2_A 14 PQALRSVINLYNDIKDAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCE-------NSIRSQNLSHDQLIPGIK 86 (108) T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEH-------HHHHHTTCCGGGBCTTCE T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHCCCEEEECH-------HHHHHCCCCHHHCCCCCE T ss_conf 9999999999732799839999947799999869815899999997899899648-------999884999789399988 Q ss_pred CCCHHHHHHHHHH Q ss_conf 6612489999999 Q 537021.9.peg.3 89 ITDQQTAEVVEMV 101 (150) Q Consensus 89 VTd~~tl~iv~~v 101 (150) +.+....++++.- T Consensus 87 ~Vpsgi~~l~~lq 99 (108) T 2pd2_A 87 IVTSGVGEIVRKQ 99 (108) T ss_dssp EESCHHHHHHHHH T ss_pred EECHHHHHHHHHH T ss_conf 9542899999999 No 61 >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* Probab=38.79 E-value=20 Score=15.94 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=26.9 Q ss_pred HHHHHHHHHCCCCEEEEECCCH----------HHHHHHHHCCCCCEE Q ss_conf 9999998518971799845724----------578899970898115 Q 537021.9.peg.3 47 VNDIALLKKSNITPVIVHGGGP----------QIGAVLEKMGIKSKF 83 (150) Q Consensus 47 ~~dI~ll~~~G~k~ViVHGgg~----------qI~~~l~~~gi~~~~ 83 (150) .+|.+.+-.--.++|||.|-|= ++.+.|++.|++.+| T Consensus 36 ~edvA~~L~~A~~VIIVPGYGMAVAQAQh~V~EL~~~L~~~G~~V~f 82 (203) T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSY 82 (203) T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 99999997469859997582799999999999999999968982489 No 62 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Probab=38.05 E-value=21 Score=15.86 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=36.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEE Q ss_conf 9999998518971799845724578899970898115578346612489999999741668999999982899768-778 Q 537021.9.peg.3 47 VNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAI-GIC 125 (150) Q Consensus 47 ~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~av-gls 125 (150) .+=+......| ++|.--..|+++ |.+.|+ .+|+|+|+--... ..|...|.+-+ ..- T Consensus 95 ~~lIr~~~~~g-k~I~aIC~G~~l---LA~AGL----L~GrkaTth~~~~---------------~~L~~~ga~~vd~~v 151 (365) T 3fse_A 95 VRFVQEAMEQG-KLVAAVCHGPQV---LIEGDL----LRGKQATGFIAIS---------------KDMMNAGADYLDEAL 151 (365) T ss_dssp HHHHHHHHHTT-CEEEEETTTHHH---HHHTTC----CTTCEECCCGGGH---------------HHHHHTTCEECCSSC T ss_pred HHHHHHHHHCC-CEEEEECHHHHH---HHHCCC----CCCCEEEECCCHH---------------HHHHHCCCEEECCCE T ss_conf 99999999849-879885578999---997797----6998575063489---------------999985995855999 Q ss_pred EEECCEEEEEE Q ss_conf 65589899997 Q 537021.9.peg.3 126 GKDGNMVFAEK 136 (150) Q Consensus 126 g~dg~li~a~~ 136 (150) .+|||+|+++- T Consensus 152 VvDGniITs~G 162 (365) T 3fse_A 152 VVDGNLITSRE 162 (365) T ss_dssp EEETTEEEECS T ss_pred EECCCEEECCC T ss_conf 98199897987 No 63 >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Probab=37.20 E-value=21 Score=15.78 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 6899999999998518971799845724 Q 537021.9.peg.3 41 DLSKDFVNDIALLKKSNITPVIVHGGGP 68 (150) Q Consensus 41 ~l~~~~~~dI~ll~~~G~k~ViVHGgg~ 68 (150) .....|+..+..|...++++|+|+-|.+ T Consensus 56 ~~l~gf~~~l~~ll~~~i~pvfVFDG~~ 83 (340) T 1b43_A 56 SHLSGLFYRTINLMEAGIKPVYVFDGEP 83 (340) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCSC T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 7999999999999966997399988998 No 64 >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* Probab=37.16 E-value=21 Score=15.78 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=26.1 Q ss_pred HHHHHHHHCCCCEEEEECCCHH----------HHHHHHHCCCCCEE Q ss_conf 9999985189717998457245----------78899970898115 Q 537021.9.peg.3 48 NDIALLKKSNITPVIVHGGGPQ----------IGAVLEKMGIKSKF 83 (150) Q Consensus 48 ~dI~ll~~~G~k~ViVHGgg~q----------I~~~l~~~gi~~~~ 83 (150) +|.+.+-.--.++|||.|-|=. +.+.|++.|++.+| T Consensus 36 ~daa~~L~~A~~VIIVPGYGMAVAQAQh~V~El~~~L~~~g~~V~f 81 (207) T 1djl_A 36 DNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRF 81 (207) T ss_dssp HHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999998569859998682799998889999999999977996999 No 65 >2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Probab=36.40 E-value=22 Score=15.70 Aligned_cols=55 Identities=7% Similarity=0.135 Sum_probs=23.0 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCC----HHHHHHHHHCCCC Q ss_conf 889998675672474689999999999851897179984572----4578899970898 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGG----PQIGAVLEKMGIK 80 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg----~qI~~~l~~~gi~ 80 (150) |.++.=+.|.++.+....+...+-+..|+..|++++++-++. ..+-+.+..+|++ T Consensus 4 k~vlfDlDGTL~~~~~~i~~a~e~i~~l~~~g~~~~~~Tn~~~~~~~~~~~~l~~lg~~ 62 (250) T 2c4n_A 4 KNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD 62 (250) T ss_dssp CEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCC T ss_pred CEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 79999698820869991820999999999879948999189999999999888751888 No 66 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Probab=36.14 E-value=22 Score=15.67 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=42.4 Q ss_pred HHHHHHHHHHH----CCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE---CCCH--------HHHHHHHHC Q ss_conf 89999999987----59889998675672474689999999999851897179984---5724--------578899970 Q 537021.9.peg.3 13 LEQVLPFVQFY----ENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVH---GGGP--------QIGAVLEKM 77 (150) Q Consensus 13 l~ea~pYi~~~----r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVH---Ggg~--------qI~~~l~~~ 77 (150) ++.+..||..| .|..++|-+.|.+ |...+-.++.+++ ...+.+++.+| |-++ .+.+..+++ T Consensus 2 ~~~~~~~i~~~~l~~~~~~v~va~SGG~--DS~~Ll~~l~~~~--~~~~~~~~~~hvnh~lr~~~s~~~~~~~~~~~~~~ 77 (464) T 3a2k_A 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGP--DSLALLHVFLSLR--DEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVER 77 (464) T ss_dssp CSHHHHHHHHTCSSSCSSBEEEECCSSH--HHHHHHHHHHHHH--HTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCHH--HHHHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC T ss_conf 7899999997389998398999980719--9999999999988--97298599999779899866699999999999984 Q ss_pred CCCCEEE Q ss_conf 8981155 Q 537021.9.peg.3 78 GIKSKFE 84 (150) Q Consensus 78 gi~~~~v 84 (150) |++-... T Consensus 78 ~i~~~~~ 84 (464) T 3a2k_A 78 RILCETA 84 (464) T ss_dssp TCEEEEE T ss_pred CCEEEEE T ss_conf 9919999 No 67 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=36.01 E-value=22 Score=15.66 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=20.4 Q ss_pred HHHHCCCCEEEEECCC--------HHHHHHHHHCCCCCEEECCC Q ss_conf 9851897179984572--------45788999708981155783 Q 537021.9.peg.3 52 LLKKSNITPVIVHGGG--------PQIGAVLEKMGIKSKFENGL 87 (150) Q Consensus 52 ll~~~G~k~ViVHGgg--------~qI~~~l~~~gi~~~~v~G~ 87 (150) ++...|.|++||.|.+ .++.+.|++.|++....++. T Consensus 35 ~l~~~g~r~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~vf~~v 78 (371) T 1o2d_A 35 IIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEV 78 (371) T ss_dssp GGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEE T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 99975995899976868887359999999998769859996886 No 68 >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Probab=35.69 E-value=22 Score=15.63 Aligned_cols=71 Identities=10% Similarity=0.144 Sum_probs=44.9 Q ss_pred CCHHHHHHHHHHHHC----CCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCC-CEEEE---ECCCHH-------HHHHH Q ss_conf 622899999999875----9889998675672474689999999999851897-17998---457245-------78899 Q 537021.9.peg.3 10 AEILEQVLPFVQFYE----NETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNI-TPVIV---HGGGPQ-------IGAVL 74 (150) Q Consensus 10 a~~l~ea~pYi~~~r----~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~-k~ViV---HGgg~q-------I~~~l 74 (150) ..+++.++.+++.++ ++.++|-++|.. |...+-.++..+ ....+. .+.++ ||-++. +.+.+ T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~kvlva~SGG~--DS~~Ll~~l~~l--~~~~~~~~i~~~hv~h~~r~~s~~~~~~v~~~~ 80 (317) T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGV--DSVVLTDVLLKL--KNYFSLKEVALAHFNHMLRESAERDEEFCKEFA 80 (317) T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSH--HHHHHHHHHHHS--TTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCHH--HHHHHHHHHHHH--HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9999999999999846799785999981829--999999999999--987799809999961899975599999999999 Q ss_pred HHCCCCCEEE Q ss_conf 9708981155 Q 537021.9.peg.3 75 EKMGIKSKFE 84 (150) Q Consensus 75 ~~~gi~~~~v 84 (150) +++|++-... T Consensus 81 ~~~~i~~~~~ 90 (317) T 1wy5_A 81 KERNMKIFVG 90 (317) T ss_dssp HHHTCCEEEE T ss_pred HHCCCCCCCC T ss_conf 9606242211 No 69 >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Probab=32.14 E-value=26 Score=15.26 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=5.8 Q ss_pred HCCCCEEEEE-CCCHH Q ss_conf 1897179984-57245 Q 537021.9.peg.3 55 KSNITPVIVH-GGGPQ 69 (150) Q Consensus 55 ~~G~k~ViVH-Ggg~q 69 (150) ......|++| |.+|. T Consensus 103 ~~~~~~VlihD~arP~ 118 (236) T 2px7_A 103 AASLPLVLVHDVARPF 118 (236) T ss_dssp HCCSSEEEECCTTCCC T ss_pred CCCCCEEEECCCHHHC T ss_conf 3455645640210203 No 70 >2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} Probab=31.64 E-value=6.2 Score=19.21 Aligned_cols=87 Identities=9% Similarity=0.103 Sum_probs=47.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 46899999999998518971799845724578899970898115578346612489999999741668999999982899 Q 537021.9.peg.3 40 TDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGT 119 (150) Q Consensus 40 ~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~ 119 (150) +++.+++.+=+...+..|+.+|.+.--.+.. ..-.-..++++.++.-+.+. -+.+....+..+++|...|+++|+ T Consensus 27 ~~~i~~i~~l~~~~r~~g~pVi~v~h~~~~~----~~g~~~~~l~~~l~~~~~~~-v~~K~~~saF~~t~L~~~L~~~~i 101 (167) T 2a67_A 27 PAVLDKVNQRIAVYRQHHAPIIFVQHEETEL----PFGSDSWQLFEKLDTQPTDF-FIRKTHANAFYQTNLNDLLTEQAV 101 (167) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECBTTB----CTTSTTTSBCTTSCCCTTSE-EEEESSSSTTTTSSHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----CCCCCCCCCCCCCCCCCCCE-EEECCCCCCCCCCHHHHHHHHCCC T ss_conf 9999999999999988599679983278988----99998564480218899998-997887567778629999986599 Q ss_pred CEEEEEEEECCE Q ss_conf 768778655898 Q 537021.9.peg.3 120 QAIGICGKDGNM 131 (150) Q Consensus 120 ~avglsg~dg~l 131 (150) ..+-++|.+.+. T Consensus 102 ~~lil~G~~t~~ 113 (167) T 2a67_A 102 QTLEIAGVQTEF 113 (167) T ss_dssp CEEEEEEECTTT T ss_pred CEEEEEEECCCH T ss_conf 889999615357 No 71 >3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2} Probab=31.46 E-value=26 Score=15.19 Aligned_cols=65 Identities=12% Similarity=0.332 Sum_probs=46.1 Q ss_pred HHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHCCCCCEEECCC-CCCC Q ss_conf 987598899986756724746899999999998518971799845724-5788999708981155783-4661 Q 537021.9.peg.3 21 QFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP-QIGAVLEKMGIKSKFENGL-RITD 91 (150) Q Consensus 21 ~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~-qI~~~l~~~gi~~~~v~G~-RVTd 91 (150) ..|++.-+||.+.. +.++- +|..=+.+|+..|+.+|=|-|+.+ +..++....|++. +-.|. |-+. T Consensus 43 ~FF~~aPvVlDl~~--l~~~~---Dl~~L~~~Lr~~gl~~iGV~g~~~~~~~~~A~~~GL~i-l~~~~~~~~~ 109 (120) T 3ghf_A 43 AFLKHAPVVINVSG--LESPV---NWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPL-LTEGKEKAVR 109 (120) T ss_dssp HHHTTCEEEEEEEE--CCSSC---CHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHHTCCE-ECCCSCC--- T ss_pred HHHCCCCEEEECHH--CCCCC---CHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC-CCCCCCCCCC T ss_conf 86679978998413--48721---59999999998799899995799299999999869973-0688878899 No 72 >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TIM-barrel protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A Probab=30.98 E-value=27 Score=15.14 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=26.5 Q ss_pred CCCEEEEEECHHHHCCHH-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC Q ss_conf 598899986756724746-899999999998518971799845724578899970 Q 537021.9.peg.3 24 ENETIVVKYGGHVMNCTD-LSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77 (150) Q Consensus 24 r~ktiVIK~GG~~l~d~~-l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~ 77 (150) .|-.+.|+.|+....+.. .....+.++ +-+.-+.++|+.|+|+|.++..++.+ T Consensus 150 ~glpv~iH~g~~~~~~~~~~~p~~l~~~-~~r~P~l~~v~~H~G~~~~~~~~~~~ 203 (291) T 3irs_A 150 NGIPVIMMTGGNAGPDITYTNPEHIDRV-LGDFPDLTVVSSHGNWPWVQEIIHVA 203 (291) T ss_dssp TTCCEEEECSSSCSSSGGGGCHHHHHHH-HHHCTTCCEEEEGGGTTCHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHH T ss_conf 3986998147777742234899997434-53099967999458873299999998 No 73 >2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas} Probab=30.91 E-value=27 Score=15.13 Aligned_cols=51 Identities=29% Similarity=0.362 Sum_probs=35.3 Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEE-ECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 998518971799845724578899970898115-57834661248999999974166 Q 537021.9.peg.3 51 ALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF-ENGLRITDQQTAEVVEMVLAGSI 106 (150) Q Consensus 51 ~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~-v~G~RVTd~~tl~iv~~vL~G~v 106 (150) .+|...|..+||+-+-|+..-+.|++.||+.-. ..|. |=+ ++++..+.|++ T Consensus 61 ~~l~~~gvdvvi~~~iG~~a~~~L~~~GI~v~~~~~g~--~v~---eal~~~~~g~L 112 (120) T 2wfb_A 61 QVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQDLEGL--TVR---QAVQRFLDGQV 112 (120) T ss_dssp HHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECCCTTS--BHH---HHHHHHHTTCS T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCC--CHH---HHHHHHHHCCC T ss_conf 99987799899977889889999998699999848999--699---99999995889 No 74 >1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens} Probab=30.29 E-value=27 Score=15.07 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=28.1 Q ss_pred CCHHHHHHHHHCCCCCEEECCC----CCCCHHHHHHHH Q ss_conf 7245788999708981155783----466124899999 Q 537021.9.peg.3 66 GGPQIGAVLEKMGIKSKFENGL----RITDQQTAEVVE 99 (150) Q Consensus 66 gg~qI~~~l~~~gi~~~~v~G~----RVTd~~tl~iv~ 99 (150) ..|.+-++++++||....+.|- |||-++.+..++ T Consensus 10 aSP~aRklA~e~gIdl~~I~GTG~~GRItk~DV~~~i~ 47 (58) T 1zwv_A 10 ATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLE 47 (58) T ss_dssp SCHHHHHHHHHTTCCSSSSSSCCSSSCCCHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 69999999999399887865769999480999999997 No 75 >1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=29.83 E-value=28 Score=15.02 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=35.2 Q ss_pred HHHHCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 232206228999999998759889998675672474689999999999851897179984 Q 537021.9.peg.3 5 IYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVH 64 (150) Q Consensus 5 ~~~~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVH 64 (150) |.+..+.+.....+|-.+++||.+.|-.|++-. -.++ .+|..+|+.+|.+. T Consensus 315 I~~e~~~~~~~l~~~~~~L~GKrv~i~~~~~~~------~~l~---~~l~elGmevv~~g 365 (533) T 1mio_A 315 IAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRS------HTYM---NMLKSFGVDSLVAG 365 (533) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHH------HHHH---HHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH------HHHH---HHHHHCCCEEEEEE T ss_conf 999999999999999997579749997672678------9999---99998699699974 No 76 >3lwd_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.75A {Chromohalobacter salexigens} Probab=29.65 E-value=28 Score=15.00 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=10.1 Q ss_pred CCCHHHHHCCCHHHHHHHHHHH Q ss_conf 9600232206228999999998 Q 537021.9.peg.3 1 MTEKIYQFQAEILEQVLPFVQF 22 (150) Q Consensus 1 ~~~~~~~~~a~~l~ea~pYi~~ 22 (150) |+..+.+.+-.+-++++.+|.. T Consensus 2 m~~~~~e~~e~l~~~~a~~i~~ 23 (226) T 3lwd_A 2 MMNTTQEGRQRLAERLADTVAQ 23 (226) T ss_dssp --CHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHH T ss_conf 7466634699999999999999 No 77 >3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Oleispira antarctica} Probab=29.49 E-value=5.6 Score=19.50 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH-HHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 46899999999998518971799845724578-89997089811557834661248999999974166899999998289 Q 537021.9.peg.3 40 TDLSKDFVNDIALLKKSNITPVIVHGGGPQIG-AVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTG 118 (150) Q Consensus 40 ~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~-~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g 118 (150) +++.+++.+=+...+..|+.+|.+.-..|.=. ..+..-.-..+++..+...+.+ .-+.+.....--++.|...|.++| T Consensus 34 ~~~~~~i~~li~~ar~~g~pVi~~~~~~~~~~~~~~~~gt~g~~i~~~l~~~~~d-~vi~K~~~saf~~t~L~~~L~~~g 112 (190) T 3lqy_A 34 EAAAEQGAKLLAKFRQQGLPVVHVRHEFPTDEAPFFLPGSDGAKIHPSVAAQEGE-AVVLKHQINSFRDTDLKKVLDDAG 112 (190) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECC-CTTCSSSCTTCGGGSBCGGGCCCTTS-CEEEESSSSTTTTSSHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCC-EEEEECCCCCCCCHHHHHHHHHCC T ss_conf 9999999999999997499779995147888887556999833316735688887-147751105455602999987369 Q ss_pred CCEEEEEEEECCE Q ss_conf 9768778655898 Q 537021.9.peg.3 119 TQAIGICGKDGNM 131 (150) Q Consensus 119 ~~avglsg~dg~l 131 (150) +..+=++|...+. T Consensus 113 i~~lvv~G~~T~~ 125 (190) T 3lqy_A 113 IKKLVIVGAMTHM 125 (190) T ss_dssp CCEEEEEEECTTT T ss_pred CCEEEEEECCCCC T ss_conf 7759985212370 No 78 >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* Probab=29.37 E-value=28 Score=14.97 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=22.7 Q ss_pred HHHHHHHHCCCCEEEEECCCH----------HHHHHHHHCCCCCEE Q ss_conf 999998518971799845724----------578899970898115 Q 537021.9.peg.3 48 NDIALLKKSNITPVIVHGGGP----------QIGAVLEKMGIKSKF 83 (150) Q Consensus 48 ~dI~ll~~~G~k~ViVHGgg~----------qI~~~l~~~gi~~~~ 83 (150) +|.+.+-.--.++|||.|-|- ++.+.|+..|.+.+| T Consensus 14 ~d~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~g~~V~f 59 (180) T 1pno_A 14 EDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSY 59 (180) T ss_dssp HHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999748949997681799999889999999999868981699 No 79 >2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli} Probab=29.36 E-value=28 Score=14.97 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=23.9 Q ss_pred HHHHHHHHCCCCEEEEECCCH----------HHHHHHHHCCCCCEE Q ss_conf 999998518971799845724----------578899970898115 Q 537021.9.peg.3 48 NDIALLKKSNITPVIVHGGGP----------QIGAVLEKMGIKSKF 83 (150) Q Consensus 48 ~dI~ll~~~G~k~ViVHGgg~----------qI~~~l~~~gi~~~~ 83 (150) +|.+.+-.--.++|||.|-|- ++.+.|+..|.+.+| T Consensus 21 ~d~a~~l~~A~~ViIVPGYGmAvAqAQ~~v~el~~~L~~~g~~V~f 66 (186) T 2bru_C 21 EETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRF 66 (186) T ss_dssp HHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEE T ss_pred HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999999738909997784999998889999999999977986999 No 80 >2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8} Probab=28.99 E-value=28 Score=15.03 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.1 Q ss_pred CCHHHHHHHHHCCCCCEEECCC----CCCCHHHHHHHH Q ss_conf 7245788999708981155783----466124899999 Q 537021.9.peg.3 66 GGPQIGAVLEKMGIKSKFENGL----RITDQQTAEVVE 99 (150) Q Consensus 66 gg~qI~~~l~~~gi~~~~v~G~----RVTd~~tl~iv~ 99 (150) +.|..-++.+++|+...-+.|- |||-++.+..++ T Consensus 3 AsP~arklA~e~gidl~~i~GtG~~GRItk~DV~~~~~ 40 (41) T 2eq9_C 3 AVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41) T ss_dssp BCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 68999999999499998880789999581999999983 No 81 >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 Probab=28.94 E-value=29 Score=14.92 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=14.9 Q ss_pred CCCEEEEECCCHH----------HHHHHHHCCCCCEE Q ss_conf 9717998457245----------78899970898115 Q 537021.9.peg.3 57 NITPVIVHGGGPQ----------IGAVLEKMGIKSKF 83 (150) Q Consensus 57 G~k~ViVHGgg~q----------I~~~l~~~gi~~~~ 83 (150) ..++|||.|-|-. +.+.|+..|.+.+| T Consensus 22 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~g~~V~f 58 (184) T 1d4o_A 22 ANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRF 58 (184) T ss_dssp CSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEE T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 8909997785998998899999999999977972799 No 82 >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Probab=28.54 E-value=29 Score=14.88 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=51.9 Q ss_pred HHHHCCCEEEEEECHHH--HCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHH Q ss_conf 99875988999867567--2474689999999999851897179984572457889997089811557834661248999 Q 537021.9.peg.3 20 VQFYENETIVVKYGGHV--MNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEV 97 (150) Q Consensus 20 i~~~r~ktiVIK~GG~~--l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~i 97 (150) +..+.+++.+|.++|+. +.+ +..+++-..+..++.+-...+ |.|||...-+....+.-... .+|. ..-.++. T Consensus 369 ~~~~~~~~~tI~i~G~t~~~~~-E~~r~l~DAl~vv~~~i~~~~-v~GGGa~~~~~~~~l~~~~~-~~~~---~q~~i~~ 442 (545) T 1iok_A 369 VAKLAGGVAVIRVGGMTEIEVK-ERKDRVDDALNATRAAVQEGI-VVGGGVALVQGAKVLEGLSG-ANSD---QDAGIAI 442 (545) T ss_dssp HHTTSSCEEEEEECCSSHHHHH-HHHHHHHHHHHHHHHHHHHCE-EETTTHHHHHHGGGGGSCCC-SSHH---HHHHHHH T ss_pred CCCCCCCEEEEEECCCCHHHHH-HHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHC-CCHH---HHHHHHH T ss_conf 1356887599996899899999-999989999999999975791-36708999999999998753-6535---8999999 Q ss_pred HHHHH----------HHHHHHHHHHHHHHCCCCEEEEEEEECCEE Q ss_conf 99997----------416689999999828997687786558989 Q 537021.9.peg.3 98 VEMVL----------AGSINKKIVSLINQTGTQAIGICGKDGNMV 132 (150) Q Consensus 98 v~~vL----------~G~vn~~lv~~L~~~g~~avglsg~dg~li 132 (150) +..+| +|.=-.++++.|.+.+-...|+....|.+. T Consensus 443 fa~ALe~iP~~La~NaG~d~~~vl~~l~~~~~~~~Gid~~~g~i~ 487 (545) T 1iok_A 443 IRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYG 487 (545) T ss_dssp HHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEE T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCC T ss_conf 999999999999997799889999999954899876974799273 No 83 >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Probab=28.49 E-value=29 Score=14.91 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=33.3 Q ss_pred EEECCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCEE-------EEEEEECCEEEEE Q ss_conf 1557834661248999999----9741668999999982899768-------7786558989999 Q 537021.9.peg.3 82 KFENGLRITDQQTAEVVEM----VLAGSINKKIVSLINQTGTQAI-------GICGKDGNMVFAE 135 (150) Q Consensus 82 ~~v~G~RVTd~~tl~iv~~----vL~G~vn~~lv~~L~~~g~~av-------glsg~dg~li~a~ 135 (150) -.+.|+++|.-...+-... ++-+..-..+...|.+.|..=+ ....+|||+|+++ T Consensus 155 ~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VV~Dg~lITgq 219 (243) T 1rw7_A 155 PLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGV 219 (243) T ss_dssp BTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEEC T ss_pred CEECCCEEECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEEECCEEECC T ss_conf 53258678337988986235322246655426899999869989667888988689859988587 No 84 >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Probab=28.40 E-value=29 Score=14.86 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=62.2 Q ss_pred EEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHCCCCCEEE-------CCCCCCCHHHHHHH Q ss_conf 89998675672474689999999999851897179984572-45788999708981155-------78346612489999 Q 537021.9.peg.3 27 TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGG-PQIGAVLEKMGIKSKFE-------NGLRITDQQTAEVV 98 (150) Q Consensus 27 tiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg-~qI~~~l~~~gi~~~~v-------~G~RVTd~~tl~iv 98 (150) ..+.-++|..-...+..+.+.+-+..|+..|+++.|+-++. +.....++++++..-|- .|.|-.+++....+ T Consensus 4 ~l~~d~~~~l~~~~~~~~~~~~~l~~lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~ 83 (137) T 2pr7_A 4 GLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSGELGVEKPEEAAFQAA 83 (137) T ss_dssp EEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSSSEEEEHHHHSCCTTSHHHHHHH T ss_pred EEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCHHHHHHH T ss_conf 44231321057865453889999999998799599988999899999999849864646999704678878634430048 Q ss_pred HHHH---------HHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 9997---------416689999999828997687786 Q 537021.9.peg.3 99 EMVL---------AGSINKKIVSLINQTGTQAIGICG 126 (150) Q Consensus 99 ~~vL---------~G~vn~~lv~~L~~~g~~avglsg 126 (150) ...+ .|.-..++.++ .+.|++++.++. T Consensus 84 ~~~~~~~~~~~~~igD~~~di~~a-~~~G~~ti~~~~ 119 (137) T 2pr7_A 84 ADAIDLPMRDCVLVDDSILNVRGA-VEAGLVGVYYQQ 119 (137) T ss_dssp HHHTTCCGGGEEEEESCHHHHHHH-HHHTCEEEECSC T ss_pred HHHHCCCCCEEEEEECCHHHHHHH-HHCCCEEEEECC T ss_conf 887433543368981688889999-982998999999 No 85 >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8} Probab=27.55 E-value=15 Score=16.68 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=26.2 Q ss_pred CCHHHHHHHHHCCCCCEEECCC----CCCCHHHHHHHH Q ss_conf 7245788999708981155783----466124899999 Q 537021.9.peg.3 66 GGPQIGAVLEKMGIKSKFENGL----RITDQQTAEVVE 99 (150) Q Consensus 66 gg~qI~~~l~~~gi~~~~v~G~----RVTd~~tl~iv~ 99 (150) ..|.+-++++++|+...-+.|- |||-++.+..++ T Consensus 2 AsPaarkla~e~gidl~~i~GsG~~GRItk~DV~~~i~ 39 (40) T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39 (40) T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-- T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 89899999999399998871789999583999999982 No 86 >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Probab=27.18 E-value=31 Score=14.72 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 6899999999998518971799845724 Q 537021.9.peg.3 41 DLSKDFVNDIALLKKSNITPVIVHGGGP 68 (150) Q Consensus 41 ~l~~~~~~dI~ll~~~G~k~ViVHGgg~ 68 (150) +....|+..+..+...|++||.|+-|.+ T Consensus 56 ~~l~gf~~~l~~ll~~~I~PifVFDG~~ 83 (336) T 1rxw_A 56 SHLSGILYRVSNMVEVGIRPVFVFDGEP 83 (336) T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSC T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 7999999999999966992799985999 No 87 >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Probab=26.57 E-value=32 Score=14.65 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=26.2 Q ss_pred CCHHHHHHHHHCCCCCEEECCC----CCCCHHHHHHH Q ss_conf 7245788999708981155783----46612489999 Q 537021.9.peg.3 66 GGPQIGAVLEKMGIKSKFENGL----RITDQQTAEVV 98 (150) Q Consensus 66 gg~qI~~~l~~~gi~~~~v~G~----RVTd~~tl~iv 98 (150) ..|.+-++.+++||....+.|- |||-++....+ T Consensus 2 AsP~arklA~e~gidl~~V~gTG~~GrItk~DV~~~~ 38 (40) T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40) T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHH T ss_conf 7989999999939989888078999969499999873 No 88 >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} Probab=25.96 E-value=33 Score=14.58 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=31.6 Q ss_pred EEECCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCEE-------EEEEEECCEEEEE Q ss_conf 1557834661248999999974----1668999999982899768-------7786558989999 Q 537021.9.peg.3 82 KFENGLRITDQQTAEVVEMVLA----GSINKKIVSLINQTGTQAI-------GICGKDGNMVFAE 135 (150) Q Consensus 82 ~~v~G~RVTd~~tl~iv~~vL~----G~vn~~lv~~L~~~g~~av-------glsg~dg~li~a~ 135 (150) -.+.|+|+|.-..-+-...-+. +..-..+...|.+.|.+=. .-..+|||+|+++ T Consensus 155 ~l~~Gr~vT~f~~~eE~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~vVvDg~lITgq 219 (244) T 3kkl_A 155 PLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGV 219 (244) T ss_dssp BTTTTCEECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEES T ss_pred EECCCCEEEECCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEEECCEEECC T ss_conf 23388668505988986213111256555436999999779989567889998889859988088 No 89 >2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} Probab=25.92 E-value=33 Score=14.58 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=35.8 Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99851897179984572457889997089811557834661248999999974166 Q 537021.9.peg.3 51 ALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSI 106 (150) Q Consensus 51 ~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~v 106 (150) .+|...|..+||+-+-|+..-+.|++.||.+-. +..-|-+ ++++..+.|++ T Consensus 57 ~~l~~~gv~~vi~~~iG~~a~~~l~~~GI~v~~--~~~g~v~---eal~~~~~g~L 107 (121) T 2yx6_A 57 NFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVT--GVYGRIS---DVIKAFIGGKL 107 (121) T ss_dssp HHHHHTTCCEEECSBCCHHHHHHHHHTTCEEEC--SBCSBHH---HHHHHHHTTCC T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEE--CCCCCHH---HHHHHHHHCCC T ss_conf 999876998999886798899999987999998--4898999---99999995989 No 90 >2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Probab=25.73 E-value=33 Score=14.56 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=17.1 Q ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 889998675672474689999999999851897179984 Q 537021.9.peg.3 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVH 64 (150) Q Consensus 26 ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVH 64 (150) |.++.=++|.++.+....+.-.+-+..|+..|++++++- T Consensus 8 KaviFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~T 46 (259) T 2ho4_A 8 KAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVT 46 (259) T ss_dssp CEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEE T ss_pred CEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC T ss_conf 899992998028299348019999999998799789982 No 91 >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Probab=25.44 E-value=33 Score=14.52 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=13.7 Q ss_pred EEEEECCC---------HHHHHHHHHCCCCC Q ss_conf 79984572---------45788999708981 Q 537021.9.peg.3 60 PVIVHGGG---------PQIGAVLEKMGIKS 81 (150) Q Consensus 60 ~ViVHGgg---------~qI~~~l~~~gi~~ 81 (150) +|++|||| -.+.+.|.+.|+.. T Consensus 46 vi~~HGGg~~~~~~~~~~~~a~~la~~Gy~v 76 (276) T 3hxk_A 46 IIICPGGGYQHISQRESDPLALAFLAQGYQV 76 (276) T ss_dssp EEEECCSTTTSCCGGGSHHHHHHHHHTTCEE T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 9998998544788066699999999889989 No 92 >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Probab=24.89 E-value=34 Score=14.46 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=7.1 Q ss_pred CCEEEEECC-CHHHHH Q ss_conf 717998457-245788 Q 537021.9.peg.3 58 ITPVIVHGG-GPQIGA 72 (150) Q Consensus 58 ~k~ViVHGg-g~qI~~ 72 (150) -..|++|-+ .|.++. T Consensus 104 ~d~v~~~~~~~P~i~~ 119 (231) T 1vgw_A 104 TDNILVHDAARCCLPS 119 (231) T ss_dssp TSEEEECCTTCTTCCH T ss_pred CCEEEEEECCCCCCCH T ss_conf 7658994044346999 No 93 >3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.60A {Pseudomonas syringae PV} Probab=24.86 E-value=12 Score=17.25 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-CCC-------------HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 689999999999851897179984-572-------------457889997089811557834661248999999974166 Q 537021.9.peg.3 41 DLSKDFVNDIALLKKSNITPVIVH-GGG-------------PQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSI 106 (150) Q Consensus 41 ~l~~~~~~dI~ll~~~G~k~ViVH-Ggg-------------~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~v 106 (150) ++.+++.+=+...+..|+.+|.+. ... +.....+.+-.-..+++..+...+.+. -+-+...++.. T Consensus 48 ~~v~~i~~L~~~ar~~gipVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~el~~~l~p~~~d~-vi~K~~~SaF~ 126 (233) T 3irv_A 48 DIVQPIQKLLQAARAAQVMVIYLRHIVRGDGSDTGRMRDLYPNVDQILARHDPDVEVIEALAPQSDDV-IVDKLFYSGFH 126 (233) T ss_dssp GGHHHHHHHHHHHHHTTCEEEEEEECBCSSSTTCSHHHHHSTTHHHHSBTTCGGGSBCGGGCCCTTSE-EEEESSSCSST T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCE-ECCCCCCCCCC T ss_conf 99999999999999859918998634788615666640247754333458999722130337887652-04677678875 Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCE Q ss_conf 8999999982899768778655898 Q 537021.9.peg.3 107 NKKIVSLINQTGTQAIGICGKDGNM 131 (150) Q Consensus 107 n~~lv~~L~~~g~~avglsg~dg~l 131 (150) +++|...|.+.|+..+-++|...+. T Consensus 127 ~t~L~~~Lr~~gi~~lvi~G~~T~~ 151 (233) T 3irv_A 127 NTDLDTVLRARDVDTIIVCGTVTNV 151 (233) T ss_dssp TSTHHHHHHHTTCCEEEEEEECTTT T ss_pred CCCHHHHHHHCCCCEEEEEEECCCC T ss_conf 4328999997499758998306556 No 94 >2pbl_A Putative esterase/lipase/thioesterase; YP_614486.1, putative thioesterase, structural genomics, joint center for structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Probab=24.61 E-value=34 Score=14.42 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=47.2 Q ss_pred CCHHHHHHHHHHHHCCCE-EEEEECHHHHCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCH---------HHHHHHHHCC Q ss_conf 622899999999875988-9998675672474689999999999851897-1799845724---------5788999708 Q 537021.9.peg.3 10 AEILEQVLPFVQFYENET-IVVKYGGHVMNCTDLSKDFVNDIALLKKSNI-TPVIVHGGGP---------QIGAVLEKMG 78 (150) Q Consensus 10 a~~l~ea~pYi~~~r~kt-iVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~-k~ViVHGgg~---------qI~~~l~~~g 78 (150) +.|-..+..+-.....+. +-|.||-+- ... + ||-.=..-.. =+|.+|||+= .+-+.|.+.| T Consensus 22 ~~w~~~~~~~r~~~~~~~~~di~YG~~~--~~~-l-----Diy~P~~~~~P~vv~iHGG~w~~g~~~~~~~~a~~la~~G 93 (262) T 2pbl_A 22 PRWAASAEDFRNSLQDRARLNLSYGEGD--RHK-F-----DLFLPEGTPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKG 93 (262) T ss_dssp HHHHHHHHHHHHHHGGGEEEEEESSSST--TCE-E-----EEECCSSSCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEE-E-----EEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 9899999999852667544688768998--817-9-----9982799997589997588875897477799999998689 Q ss_pred CCCEEECCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC Q ss_conf 981155783---466124899999997416689999999828997687786558 Q 537021.9.peg.3 79 IKSKFENGL---RITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDG 129 (150) Q Consensus 79 i~~~~v~G~---RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avglsg~dg 129 (150) ...-.++=+ ..|-++.++-+..++ ..+.++...-+.+.|.|. T Consensus 94 ~~V~~v~YRl~p~~~~~~~~~d~~~a~---------~~l~~~~~~rI~l~G~Sa 138 (262) T 2pbl_A 94 WAVAMPSYELCPEVRISEITQQISQAV---------TAAAKEIDGPIVLAGHSA 138 (262) T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHH---------HHHHHHSCSCEEEEEETH T ss_pred CEEEEECCCCCHHCCCCHHHHHHHHHH---------HHHHHCCCCCEEEEEECH T ss_conf 679963363100002000236699999---------999835634418999775 No 95 >1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.114.1.1 Probab=24.48 E-value=35 Score=14.41 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=52.5 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCC-EEECCCC Q ss_conf 622899999999875988999867567247468999999999985189717998457245788999708981-1557834 Q 537021.9.peg.3 10 AEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS-KFENGLR 88 (150) Q Consensus 10 a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~-~~v~G~R 88 (150) ...|..+.-.++.+.+-.|+|-+-|.++..-.--..+.+.+..|...|.++.+-. ..|+.+|++. ...+|.+ T Consensus 19 ~~~l~~~~nl~~~~~~~~i~vV~~G~~v~~l~~~~~~~~~i~~L~~~gV~~~~C~-------~sl~~~~i~~~~L~~~v~ 91 (113) T 1l1s_A 19 LLLISNVRNLMADLESVRIEVVAYSMGVNVLRRDSEYSGDVSELTGQGVRFCACS-------NTLRASGMDGDDLLEGVD 91 (113) T ss_dssp HHHHHHHHHHHHHCSSEEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEH-------HHHHHTTCCGGGBCTTCE T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHCCCEEEECH-------HHHHHCCCCHHHCCCCCE T ss_conf 9999999999843788749999954689999809826899999997799899756-------899883999678588889 Q ss_pred CCCHHHHHHHHHH Q ss_conf 6612489999999 Q 537021.9.peg.3 89 ITDQQTAEVVEMV 101 (150) Q Consensus 89 VTd~~tl~iv~~v 101 (150) +.+....++++.- T Consensus 92 ~Vpsgv~~l~~lQ 104 (113) T 1l1s_A 92 VVSSGVGHIVRRQ 104 (113) T ss_dssp EESCHHHHHHHHH T ss_pred EECHHHHHHHHHH T ss_conf 9622899999999 No 96 >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} Probab=24.06 E-value=17 Score=16.45 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCC Q ss_conf 4689999999999851897179984572457889997089 Q 537021.9.peg.3 40 TDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGI 79 (150) Q Consensus 40 ~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi 79 (150) ++....+++.++|.|.+| +|=-=|+|-..|++++++.|- T Consensus 102 ~~~~~~lvea~~LaHDiG-hpPFGH~GE~aL~~~~~~~~~ 140 (444) T 3bg2_A 102 FNDFGAIVAAAALAHDIG-NPPFGHSGEKAIGEFFKNGYG 140 (444) T ss_dssp HHHHHHHHHHHHHHTTTT-CCTTHHHHHHHHHHHHHTSGG T ss_pred CCCHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHCCC T ss_conf 431588999863035458-898630059999999984278 No 97 >2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Probab=23.34 E-value=36 Score=14.27 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=48.5 Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCC----HHHHHHHHHCCC Q ss_conf 0232206228999999998759889998675672474689999999999851897179984572----457889997089 Q 537021.9.peg.3 4 KIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGG----PQIGAVLEKMGI 79 (150) Q Consensus 4 ~~~~~~a~~l~ea~pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg----~qI~~~l~~~gi 79 (150) ++...++..+++.+. +=|.|+.=+.|.++......+.-.+-|..|+..|++++++--.+ +++-+.|+++|+ T Consensus 5 ~~~~~~~~~~~~~l~-----~~k~ilFDlDGtL~~~~~~i~~a~~~i~~l~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~ 79 (306) T 2oyc_A 5 RCERLRGAALRDVLG-----RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79 (306) T ss_dssp CCEECCHHHHHHHHH-----HCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTC T ss_pred HHCCCCHHHHHHHHH-----CCCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 522079888999997-----399999948882188998285899999999987994899959999999999999996699 Q ss_pred CC Q ss_conf 81 Q 537021.9.peg.3 80 KS 81 (150) Q Consensus 80 ~~ 81 (150) +. T Consensus 80 ~~ 81 (306) T 2oyc_A 80 GG 81 (306) T ss_dssp CS T ss_pred CC T ss_conf 87 No 98 >3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Probab=22.91 E-value=37 Score=14.22 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=56.7 Q ss_pred HHHHCCCHHHHHHHHHHHH-------CC----CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 2322062289999999987-------59----889998675672474689999999999851897179984572457889 Q 537021.9.peg.3 5 IYQFQAEILEQVLPFVQFY-------EN----ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAV 73 (150) Q Consensus 5 ~~~~~a~~l~ea~pYi~~~-------r~----ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~ 73 (150) |.+..++++=....|++.. .+ +.+|+-+.+--..|......|.+=+..++..|+++.+.. -.+++-+. T Consensus 33 I~r~~g~L~F~na~~~~~~i~~~~~~~~~~~~k~vVld~~~v~~iD~tg~~~L~~l~~~l~~~gi~l~la~-~~~~v~~~ 111 (143) T 3llo_A 33 IFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAG-CSAQVVND 111 (143) T ss_dssp EEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEES-CCHHHHHH T ss_pred EEECCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCHHHHHH T ss_conf 99848985771228888887666420257982599999668985887999999999999997799999980-98799999 Q ss_pred HHHCCCCCE Q ss_conf 997089811 Q 537021.9.peg.3 74 LEKMGIKSK 82 (150) Q Consensus 74 l~~~gi~~~ 82 (150) |++.|+-.. T Consensus 112 l~~~g~~~~ 120 (143) T 3llo_A 112 LTSNRFFEN 120 (143) T ss_dssp HHHTTTTSS T ss_pred HHHCCCHHH T ss_conf 998799121 No 99 >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Probab=22.51 E-value=38 Score=14.16 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 68999999999985189717998457245 Q 537021.9.peg.3 41 DLSKDFVNDIALLKKSNITPVIVHGGGPQ 69 (150) Q Consensus 41 ~l~~~~~~dI~ll~~~G~k~ViVHGgg~q 69 (150) +....|+..+..+...+++||+|+-|.+- T Consensus 56 ~~l~gf~~~l~~ll~~~i~pifVFDG~~~ 84 (326) T 1a76_A 56 SAYNGVFYKTIHLLENDITPIWVFDGEPP 84 (326) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCCSS T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 59999999999998579987999979984 No 100 >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans} Probab=22.04 E-value=39 Score=14.10 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=35.1 Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEEE Q ss_conf 99985189717998457245788999708981155783466124899999997416689999999828997687-78655 Q 537021.9.peg.3 50 IALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIG-ICGKD 128 (150) Q Consensus 50 I~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~vn~~lv~~L~~~g~~avg-lsg~d 128 (150) +......| ++|.--..||.+ |.+.|+ .+|+|+|+...+. ..|...|.+-+. --..| T Consensus 101 l~~~~~~~-k~i~aiC~G~~~---La~aGl----L~gr~~T~~~~~~---------------~~l~~~g~~~~~~~vV~D 157 (190) T 2vrn_A 101 VRDMYDAG-KPIAAICHGPWS---LSETGI----AQGLKMTSWSSLK---------------RELTLAGAQWVDEECVTD 157 (190) T ss_dssp HHHHHHTT-CCEEEC-CTTHH---HHHTTT----TTTCEECCCGGGH---------------HHHHHTTCEECCCSCEEE T ss_pred HHHHHHCC-CCCCCCCHHHHH---HHHCCC----CCCCEEEECCCHH---------------HHHHHCCCEEECCCEEEE T ss_conf 99987527-740033428999---997798----7798598474289---------------999977997907999997 Q ss_pred CCEEEEE Q ss_conf 8989999 Q 537021.9.peg.3 129 GNMVFAE 135 (150) Q Consensus 129 g~li~a~ 135 (150) ||+|+++ T Consensus 158 g~iiTa~ 164 (190) T 2vrn_A 158 KGVVTSR 164 (190) T ss_dssp TTEEECS T ss_pred CCEEECC T ss_conf 9999897 No 101 >1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Probab=22.03 E-value=39 Score=14.10 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=39.9 Q ss_pred HHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCE Q ss_conf 99998759889998675672474689999999999851897179984572457889997089811 Q 537021.9.peg.3 18 PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSK 82 (150) Q Consensus 18 pYi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~ 82 (150) ..+...+++.+|+-..|+.+... .+..-+..+...|+.+-+|||-. .+.......|++.. T Consensus 76 ~i~~~a~~~~Vv~L~~GDP~i~~----t~~~l~~~~~~~gi~vevIPGiS-s~~aa~a~~Gl~~~ 135 (294) T 1wde_A 76 EIVSRALDAVVAVVTAGDPMVAT----THSSLAAEALEAGVAVRYIPGVS-GVQAARGATMLSFY 135 (294) T ss_dssp HHTCCSSCCEEEEEESBCTTSSS----SHHHHHHHHHHTTCEEEEECCCC-HHHHHHHHHTCCGG T ss_pred HHHHHHCCCCEEEEECCCCCCCC----CHHHHHHHHHHCCCCEEEECCHH-HHHHHHHHHCCCCC T ss_conf 99998557987999679998767----18999999998899789978878-99999999589845 No 102 >1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8} Probab=21.92 E-value=39 Score=14.09 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=54.5 Q ss_pred HHCCCHHHHHHHHHHHHC--CCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHCCCCCEE Q ss_conf 220622899999999875--98899986756724746899999999998518971799845724-578899970898115 Q 537021.9.peg.3 7 QFQAEILEQVLPFVQFYE--NETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP-QIGAVLEKMGIKSKF 83 (150) Q Consensus 7 ~~~a~~l~ea~pYi~~~r--~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~-qI~~~l~~~gi~~~~ 83 (150) |.....+++...+....+ ..++||-+|||.+-...+.+ .+..-+.++..+..-.| .+.+.++++..+... T Consensus 47 p~~~~~l~~~~~~~~~~~~~~~vV~iGIGGS~LG~~al~~-------al~~~~~~~~f~~n~d~~~~~~~l~~l~~~~tl 119 (415) T 1zzg_A 47 PEDTETLREVRRYREANPWVEDFVLIGIGGSALGPKALEA-------AFNESGVRFHYLDHVEPEPILRLLRTLDPRKTL 119 (415) T ss_dssp GGCTTHHHHHHHHHHTCTTCSEEEEECCGGGTHHHHHHHH-------HHCCSCCEEEEECSCCHHHHHHHHHHSCGGGEE T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHH-------HHHCCCCCEEEECCCCHHHHHHHHHCCCCCCEE T ss_conf 7557899999999987468986999966588899999999-------984679708994689989999999628942279 Q ss_pred E--CCCCCCCHHHHHHHHHH Q ss_conf 5--78346612489999999 Q 537021.9.peg.3 84 E--NGLRITDQQTAEVVEMV 101 (150) Q Consensus 84 v--~G~RVTd~~tl~iv~~v 101 (150) + -----|+.||+.....+ T Consensus 120 ~iviSKSg~T~Et~~~~~~~ 139 (415) T 1zzg_A 120 VNAVSKSGSTAETLAGLAVF 139 (415) T ss_dssp EEEEESSSCCHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99981898987899999999 No 103 >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Probab=21.35 E-value=40 Score=14.01 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=12.5 Q ss_pred HHCCCCCEEECC----CCCCCHHHHHHHHHHH Q ss_conf 970898115578----3466124899999997 Q 537021.9.peg.3 75 EKMGIKSKFENG----LRITDQQTAEVVEMVL 102 (150) Q Consensus 75 ~~~gi~~~~v~G----~RVTd~~tl~iv~~vL 102 (150) ...|.+..++.| .+||+++.|+.++..| T Consensus 201 ~~~~~~i~~i~~~~~n~kItt~eDl~~Ae~ll 232 (246) T 3f1c_A 201 LLAGDDVKLVKGEIFNIKITTPYDLKVANAII 232 (246) T ss_dssp HHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH T ss_pred HHCCCCEEEEECCHHHCCCCCHHHHHHHHHHH T ss_conf 98799769997787764899999999999999 No 104 >1rdu_A Conserved hypothetical protein; structure determination, structural proteomics, atnos, candid, joint center for structural genomics (JCSG); NMR {Thermotoga maritima} SCOP: c.55.5.1 Probab=21.06 E-value=40 Score=13.98 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.1 Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99851897179984572457889997089811557834661248999999974166 Q 537021.9.peg.3 51 ALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSI 106 (150) Q Consensus 51 ~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~G~v 106 (150) ..|...|...||+-+-|+..-+.|++.||++-...+ -| .-+++++.+.|++ T Consensus 56 ~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~--g~---v~eal~~~~~g~L 106 (116) T 1rdu_A 56 QSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRFEG--GT---VQEAIDAFSEGRL 106 (116) T ss_dssp HHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECCCS--CB---HHHHHHHHHTTCS T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEECCC--CC---HHHHHHHHHHCCC T ss_conf 999987998999888798899999988999997399--89---9999999996879 No 105 >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Probab=20.99 E-value=41 Score=13.97 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 6899999999998518971799845724 Q 537021.9.peg.3 41 DLSKDFVNDIALLKKSNITPVIVHGGGP 68 (150) Q Consensus 41 ~l~~~~~~dI~ll~~~G~k~ViVHGgg~ 68 (150) +....|+..+..|...++.+|+|+-|.+ T Consensus 61 ~~l~gf~~~l~~ll~~~i~pifVFDG~~ 88 (379) T 1ul1_X 61 SHLMGMFYRTIRMMENGIKPVYVFDGKP 88 (379) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCSC T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 6999999999999856997299989999 No 106 >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.3 Probab=20.51 E-value=42 Score=13.90 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEC-------CCCCCCHHHHHHHHHHHH-------HHHHH Q ss_conf 9999999999851897179984572457889997089811557-------834661248999999974-------16689 Q 537021.9.peg.3 43 SKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFEN-------GLRITDQQTAEVVEMVLA-------GSINK 108 (150) Q Consensus 43 ~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~-------G~RVTd~~tl~iv~~vL~-------G~vn~ 108 (150) ++.+.+-+..|+..|++++++-++.+.+-+.+++.|+..-|-. +.+-.+++.+..+...+. |.--. T Consensus 84 ~~g~~~~L~~L~~~g~~~~v~sn~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~l~VgDs~~ 163 (190) T 2fi1_A 84 FEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVIGDRPI 163 (190) T ss_dssp CTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEEEEESSHH T ss_pred CCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH T ss_conf 84799999998745813899537864320100013664333523313335788987799999999769997699907999 Q ss_pred HHHHHHHHCCCCEEEEE Q ss_conf 99999982899768778 Q 537021.9.peg.3 109 KIVSLINQTGTQAIGIC 125 (150) Q Consensus 109 ~lv~~L~~~g~~avgls 125 (150) ++ .+-++.|++++.++ T Consensus 164 di-~aA~~~G~~~i~v~ 179 (190) T 2fi1_A 164 DI-EAGQAAGLDTHLFT 179 (190) T ss_dssp HH-HHHHHTTCEEEECS T ss_pred HH-HHHHHCCCEEEEEC T ss_conf 99-99998699799999 No 107 >3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Probab=20.32 E-value=42 Score=13.88 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=37.5 Q ss_pred HHHHHCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCC Q ss_conf 999875988999867567247468999999999985189717998457245788999708981 Q 537021.9.peg.3 19 FVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 (150) Q Consensus 19 Yi~~~r~ktiVIK~GG~~l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~ 81 (150) .+...+++.+|.-.+| ||..+......+..+...|+.+-+|+|-... + .....|+.+ T Consensus 89 i~~~~~~g~vv~l~~G----DP~i~~~~~~~~~~~~~~gi~~eviPGiS~~-~-A~aa~g~~~ 145 (292) T 3i4t_A 89 ILEPAKTKNVALLVVG----DVYGATTHSDIFVRCQKMGIEVKVIHNASIM-N-AIGCSGLQL 145 (292) T ss_dssp THHHHTTSEEEEEESB----CHHHHCTTHHHHHHHHHHTCCEEEECCCCHH-H-HGGGGSCCG T ss_pred HHHHHCCCCEEEEECC----CCCCCCHHHHHHHHHHHCCCCEEECCCCCHH-H-HHHHHCCCC T ss_conf 9999748998999679----9988885999999999769928983886599-9-999848974 No 108 >1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2 Probab=20.30 E-value=42 Score=13.88 Aligned_cols=81 Identities=23% Similarity=0.215 Sum_probs=43.0 Q ss_pred EEEEECHHH----HCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH Q ss_conf 999867567----2474689999999999851897179984572457889997089811557834661248999999974 Q 537021.9.peg.3 28 IVVKYGGHV----MNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLA 103 (150) Q Consensus 28 iVIK~GG~~----l~d~~l~~~~~~dI~ll~~~G~k~ViVHGgg~qI~~~l~~~gi~~~~v~G~RVTd~~tl~iv~~vL~ 103 (150) .||-.||.. ..+++ +++-|......| ++|.-...|+.+ |.+.|+ .+|+|+|+....+ T Consensus 64 ~liipGG~~~~~~~~~~~----l~~~l~~~~~~~-k~i~aic~g~~~---La~aGl----L~g~~~t~~~~~~------- 124 (166) T 1g2i_A 64 ALVLPGGRAPERVRLNEK----AVSIARKMFSEG-KPVASICHGPQI---LISAGV----LRGRKGTSYPGIK------- 124 (166) T ss_dssp EEEECCBSHHHHHTTCHH----HHHHHHHHHHTT-CCEEEETTTTHH---HHHHTC----CTTCEECCCGGGH------- T ss_pred EEEECCCCCHHHHCCCHH----HHHHHHHHHHCC-CEEEECCCHHHH---HHHHHH----CCCCEEECCHHHH------- T ss_conf 899846530444215878----899999998649-999833618899---997451----2897463388799------- Q ss_pred HHHHHHHHHHHHHCCCCEE-EEEEEECCEEEEE Q ss_conf 1668999999982899768-7786558989999 Q 537021.9.peg.3 104 GSINKKIVSLINQTGTQAI-GICGKDGNMVFAE 135 (150) Q Consensus 104 G~vn~~lv~~L~~~g~~av-glsg~dg~li~a~ 135 (150) ..+...|.+-+ ..-..|||+|+|+ T Consensus 125 --------~~l~~~g~~~~~~~vv~Dg~iiTa~ 149 (166) T 1g2i_A 125 --------DDMINAGVEWVDAEVVVDGNWVSSR 149 (166) T ss_dssp --------HHHHHTTCEECCSSCEEETTEEEEC T ss_pred --------HHHHHCCCEEECCCEEEECCEEECC T ss_conf --------9999869968079999979999897 No 109 >1u55_A Heme-based methyl-accepting chemotaxis protein; H-NOX domain, oxygen sensor, signal transduction, signaling protein; HET: HEM; 1.77A {Thermoanaerobacter tengcongensis} SCOP: d.278.1.1 PDB: 1u4h_A* 1u56_A* 3m0b_A* 1xbn_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A* Probab=20.17 E-value=42 Score=13.86 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=11.1 Q ss_pred HHHHHHHCCCCCE--EECCCCCCCHHHHHHHH Q ss_conf 7889997089811--55783466124899999 Q 537021.9.peg.3 70 IGAVLEKMGIKSK--FENGLRITDQQTAEVVE 99 (150) Q Consensus 70 I~~~l~~~gi~~~--~v~G~RVTd~~tl~iv~ 99 (150) .++.+++.|+++. |.....+-|.+++.++. T Consensus 22 w~~v~~~agl~~~~~f~~~~~Y~D~~~~~lv~ 53 (188) T 1u55_A 22 VDESLKSVGWEPDRVITPLEDIDDDEVRRIFA 53 (188) T ss_dssp HHHHHHHTTCCTTCCCCTTCBCCHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCEECCCCCCHHHHHHHHH T ss_conf 99999973999898241568628699999999 Done!