RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.393_1 (150 letters) >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} Length = 300 Score = 131 bits (331), Expect = 2e-32 Identities = 60/139 (43%), Positives = 93/139 (66%) Query: 1 MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP 60 ++ A++L + LP+++ + +T+V+KYGG+ M +L F D+ L+K I P Sbjct: 2 LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINP 61 Query: 61 VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ 120 V+VHGGGPQIG +L+++ I+S F +G+R+TD T +VVEMVL G +NK IV+LIN+ G Sbjct: 62 VVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGS 121 Query: 121 AIGICGKDGNMVFAEKARH 139 AIG+ GKD ++ A+K Sbjct: 122 AIGLTGKDAELIRAKKLTV 140 >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Length = 282 Score = 119 bits (298), Expect = 1e-28 Identities = 56/124 (45%), Positives = 85/124 (68%) Query: 9 QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP 68 +L + LP+++ + +T V+K+GG M + K F+ DI LLK + I P+IVHGGGP Sbjct: 5 TVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGP 64 Query: 69 QIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 I +++ +GI+ F+NG R+TD++T E+VEMVL G INK+IV +N G +A+GICGKD Sbjct: 65 AISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKD 124 Query: 129 GNMV 132 ++ Sbjct: 125 SKLI 128 >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 Score = 104 bits (259), Expect = 5e-24 Identities = 50/125 (40%), Positives = 80/125 (64%) Query: 7 QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66 +A++L + LP+++ + +VVKYGG+ M L + F D+A L+ I PV+VHGG Sbjct: 7 HIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGG 66 Query: 67 GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICG 126 GPQI A+L ++GI+ F+ G R+T + +V MVL G + +++V+LIN G A+GI G Sbjct: 67 GPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITG 126 Query: 127 KDGNM 131 +D + Sbjct: 127 EDAQL 131 >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 313 Score = 90.7 bits (224), Expect = 5e-20 Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 23/133 (17%) Query: 27 TIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76 +V+ GG+ + + IA + VI HG GPQ+G++L Sbjct: 3 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 62 Query: 77 MGIKSKFENGLRITDQQTAEVVEMVLAGS-------------INKKIVSLINQTGTQAIG 123 M + + + + KK+V++I QT Sbjct: 63 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 122 Query: 124 ICGKDGNMVFAEK 136 ++ Sbjct: 123 PAFQNPTKPVGPF 135 >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Length = 258 Score = 76.7 bits (187), Expect = 7e-16 Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP-VIVHGGGPQIGAVLEKMGIKSKFE 84 +++K GG +++ + + + + ++S+ P VIVHGGG + +++ + + K + Sbjct: 3 NPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKK 62 Query: 85 NGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH 139 NGLR+T +++ LAG+ NK +++ + A+G+ DG+ V + Sbjct: 63 NGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDE 117 >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Length = 307 Score = 75.0 bits (183), Expect = 3e-15 Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 31/144 (21%) Query: 27 TIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMG 78 +VV GG+ + D S + L K ++ HG GPQ+G +L + Sbjct: 3 KMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQ 62 Query: 79 IKSKFENGLRITDQQTA-----------------------EVVEMVLAGSINKKIVSLIN 115 +N D A + + + Sbjct: 63 AADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAF 122 Query: 116 QTGTQAIGICGKDGNMVFAEKARH 139 + T+ IG + A +A Sbjct: 123 KNPTKPIGPFLTEAEAKEAMQAGA 146 >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Score = 31.6 bits (71), Expect = 0.028 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 114 INQTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 NQT ++ + GKD +V ++K L P T Sbjct: 26 TNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVS 61 >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 Score = 30.3 bits (68), Expect = 0.080 Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 114 INQTGTQAIGICGKDGNMVFAEK 136 INQ G ++ + GKD ++ +K Sbjct: 31 INQGGLTSVAVRGKDCAVIVTQK 53 >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Score = 28.9 bits (64), Expect = 0.19 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G+ +G+ ++ A K R++ LS KK Sbjct: 30 QGSVTVGLRSNTHAVLVALK-RNADELSSYQKK 61 >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Score = 28.8 bits (64), Expect = 0.21 Identities = 7/32 (21%), Positives = 13/32 (40%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTK 148 G+ +G+ K ++ A K S + K Sbjct: 28 QGSATVGLKSKTHAVLVALKRAQSELAAHQKK 59 >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 Score = 28.3 bits (62), Expect = 0.27 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 28 IVVKYGGH-VMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66 +V+ GG + N ++ ++F I + + N V+V GG Sbjct: 3 VVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGG 42 >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 Score = 28.5 bits (63), Expect = 0.27 Identities = 11/33 (33%), Positives = 14/33 (42%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 + AIGI KDG + EK S + K Sbjct: 32 NSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64 >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 Score = 28.1 bits (61), Expect = 0.37 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 8/118 (6%) Query: 27 TIVVKYGGHVMN-----CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 IVVK G HV++ + K+ V +A L + ++V I A K+ I Sbjct: 2 RIVVKVGSHVISEENTLSFERLKNLVAFLAKLME-KYEVILVTSAA--ISAGHTKLDIDR 58 Query: 82 KFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH 139 K ++ + V + K T K Sbjct: 59 KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMM 116 >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 Score = 27.7 bits (60), Expect = 0.46 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 5/112 (4%) Query: 28 IVVKYGGHVMNCTDLSKDFV----NDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF 83 IV GG V+ + DF+ + + + + +V GGG +E + Sbjct: 3 IVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEV-AVVVGGGKLARKYIEVAEKFNSS 61 Query: 84 ENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAE 135 E Q M+L ++ +K ++ + +A V Sbjct: 62 ETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGG 113 >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Score = 27.7 bits (61), Expect = 0.50 Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G AIGI K+G ++ A+K S L +T + Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSKLLEKDTIE 62 >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 Score = 27.4 bits (60), Expect = 0.50 Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G ++GI +G ++ EK + S+ + Sbjct: 29 AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 62 >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 Score = 27.4 bits (60), Expect = 0.51 Identities = 8/33 (24%), Positives = 13/33 (39%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G ++GI +G ++ EK S T Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62 >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 Score = 27.4 bits (60), Expect = 0.56 Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G+ A+G+ +G ++ ++K S + N+ + Sbjct: 21 KGSTALGMKFANGVLLISDKKVRSRLIEQNSIE 53 >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Score = 27.3 bits (60), Expect = 0.65 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 117 TGTQAIGICGKDGNMVFAEK-ARHSLRLSPNTKK 149 G+ A+G+ G+D ++ EK + L+ +K Sbjct: 27 KGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 60 >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Score = 26.9 bits (59), Expect = 0.71 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147 + GT +IGI DG + EK S L P Sbjct: 28 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK 59 >d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]} Length = 321 Score = 26.7 bits (59), Expect = 0.77 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 9/50 (18%) Query: 51 ALLKKSNITPVIVHGGGPQIG---AVLEKMG------IKSKFENGLRITD 91 ALLK N V +GG PQ+G L+ I K G+ + D Sbjct: 53 ALLKDPNGNVVARNGGVPQLGNLTKHLQVFRDHLINQIPDKSFPGVGVID 102 >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 Score = 26.6 bits (58), Expect = 0.92 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 TGT +G+ + G ++ A+ + SL N + Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41 >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Score = 26.7 bits (58), Expect = 0.92 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%) Query: 38 NCTDLSKDFVNDIALLKKSNITPVI-------VHGGGPQIGAVLEKMGIKS 81 C+D +K L + + I V G G +L+ +GI + Sbjct: 248 VCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIIT 298 >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Score = 26.6 bits (58), Expect = 0.93 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEKARHS--LRLSPNTKK 149 AIGI DG ++ AE+ S L +T+K Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 64 >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 Score = 26.6 bits (58), Expect = 1.0 Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 +GI DG ++ AE+ Sbjct: 29 HAGTCLGILANDGVLLAAER 48 >d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]} Length = 91 Score = 26.4 bits (57), Expect = 1.0 Identities = 14/78 (17%), Positives = 24/78 (30%) Query: 32 YGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITD 91 + G+ C + V LKK I + G + G + R+ + Sbjct: 13 FAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWADRLDE 72 Query: 92 QQTAEVVEMVLAGSINKK 109 V V ++N K Sbjct: 73 DDIEAVSNYVYDQAVNSK 90 >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 Score = 26.2 bits (57), Expect = 1.1 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 + G+ AIGI K+G ++ EK S L ++ + Sbjct: 24 KLGSTAIGIATKEGVVLGVEKRATSPLLESDSIE 57 >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Score = 26.1 bits (57), Expect = 1.2 Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147 G+ AIGI +G + EK S + P++ Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRITSPLMEPSS 56 >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 Score = 26.2 bits (57), Expect = 1.3 Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 GT A+G+ GK+ ++ E+ Sbjct: 27 RGTCAVGVKGKNCVVLGCER 46 >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Score = 25.5 bits (55), Expect = 1.9 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 TGT I + +G ++ A+ + SL ++ Sbjct: 7 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 41 >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Score = 25.1 bits (54), Expect = 2.7 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 G + + KDG ++ A+ Sbjct: 8 LGASIMAVTFKDGVILGADS 27 >d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga maritima [TaxId: 2336]} Length = 107 Score = 24.9 bits (54), Expect = 2.7 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%) Query: 18 PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77 P+ F + + + N +K+ VIV G G + A E M Sbjct: 25 PYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAAFEAM 84 Query: 78 GIKSKFENGLRITDQQTAEVVEMVLAG 104 G+K + EVV L+G Sbjct: 85 GVKVIKGASGTV-----EEVVNQYLSG 106 >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 Score = 24.8 bits (53), Expect = 3.2 Identities = 5/19 (26%), Positives = 10/19 (52%) Query: 63 VHGGGPQIGAVLEKMGIKS 81 + G G + L ++GI+ Sbjct: 188 IPGIGSVLARRLNELGIQK 206 >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Score = 24.4 bits (52), Expect = 4.6 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 G +GI G+D ++ + Sbjct: 8 NGGTILGIAGEDFAVLAGDT 27 >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Score = 24.0 bits (51), Expect = 4.9 Identities = 5/25 (20%), Positives = 14/25 (56%) Query: 112 SLINQTGTQAIGICGKDGNMVFAEK 136 S+++ G + + GK+ + A++ Sbjct: 1 SIMSYNGGAVMAMKGKNCVAIAADR 25 >d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 124 Score = 24.2 bits (52), Expect = 5.2 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 18 PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIA--LLKKSNITPVIVHGGGPQIGAVLE 75 P+ E + ++ + N + + ++ + + VI GP VL Sbjct: 24 PYFMIVEMKKGNIESSEVIENPSASASGGAGIRTAQIIANNGVKAVIASSPGPNAFEVLN 83 Query: 76 KMGIKSKFENGLRITDQQTAEVVEMVLAGSINK 108 ++GIK G + E +++ G++ + Sbjct: 84 ELGIKIYRATGTSV-----EENLKLFTEGNLEE 111 >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 Score = 24.1 bits (51), Expect = 5.5 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 G + I G+D +V ++ Sbjct: 8 NGGTILAIAGEDFAIVASDT 27 >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 Score = 23.6 bits (50), Expect = 7.2 Identities = 4/19 (21%), Positives = 8/19 (42%) Query: 118 GTQAIGICGKDGNMVFAEK 136 G + + GKD + + Sbjct: 8 GGIVVAMTGKDCVAIACDL 26 >d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 73 Score = 23.5 bits (51), Expect = 7.9 Identities = 3/30 (10%), Positives = 9/30 (30%), Gaps = 4/30 (13%) Query: 74 LEKMGIKSKFENGLRITDQQTAEVVEMVLA 103 L K K ++ ++ + + Sbjct: 48 LTKHSWIIKEGEKYCPSE----PLISLAFS 73 >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} Length = 389 Score = 23.1 bits (50), Expect = 9.6 Identities = 8/19 (42%), Positives = 10/19 (52%) Query: 55 KSNITPVIVHGGGPQIGAV 73 K I P I HG +G+V Sbjct: 277 KYTINPAIAHGISEYVGSV 295 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.375 Gapped Lambda K H 0.267 0.0689 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 536,518 Number of extensions: 23640 Number of successful extensions: 116 Number of sequences better than 10.0: 1 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 49 Length of query: 150 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 72 Effective length of database: 1,336,656 Effective search space: 96239232 Effective search space used: 96239232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (22.7 bits)