HHsearch alignment for GI: peg_394 and conserved domain: cd04236
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=3.6e-38 Score=231.39 Aligned_cols=136 Identities=26% Similarity=0.464 Sum_probs=124.1
Q ss_pred CCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 98552013556999999997798499857431787320066147999999986251133432267633534555556338
Q 537021.9.peg.3 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLS 80 (142)
Q Consensus 1 ~g~~G~v~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~~i~~i~ 80 (142)
T Consensus 132 ~~~vG~~~~v~~~~i~~~i~~g~IPVIaplG~~~~Gq~~NINADtaA~aiA~aL~a~Kli~LTdv~Gvld~~~~lI~~i~ 211 (271)
T cd04236 132 GASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVH 211 (271)
T ss_pred CCCCCCCEEEEHHHHHHHHHCCCCCEECCCEECCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCEECEEC
T ss_conf 37668713860799999997899718825237899988877589999999986487679998078740778998822016
Q ss_pred H-HHHHHHHHCCCCCC---CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf 8-89999962697678---678999999999984998899952578768999996799866345
Q 537021.9.peg.3 81 I-NEARTLIKDGTISG---GMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 (142)
Q Consensus 81 ~-~e~~~l~~~~~~~~---gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i 140 (142)
T Consensus 212 l~~~~~~l~~~~~i~~~~~~~i~~i~~~l~~l~~~~s~v-i~---~phsll~ELFTd~G~GTLf 271 (271)
T cd04236 212 LPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAV-IT---SAETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEE-EE---CHHHHHHHHHCCCCCCCCC
T ss_conf 188999987076512352674778999997177873699-83---7568789986389877788