HHsearch alignment for GI: peg_394 and conserved domain: cd04237

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00  E-value=0  Score=291.06  Aligned_cols=140  Identities=29%  Similarity=0.555  Sum_probs=137.4

Q ss_pred             CCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf             98552013556999999997798499857431787320066147999999986251133432267633534555556338
Q 537021.9.peg.3    1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLS   80 (142)
Q Consensus         1 ~g~~G~v~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~~i~~i~   80 (142)
T Consensus       140 ~G~vG~v~~Vn~~~l~~ll~~~~iPVIspig~~~~G~~~NvNAD~~A~~iA~aL~A~kLi~ltdv~Gvl~~~~~~i~~l~  219 (280)
T cd04237         140 FGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELT  219 (280)
T ss_pred             CCCCCCCCEEEHHHHHHHHHCCCEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCCCCCCC
T ss_conf             46798302664999986875896589604318899988700899999999999744709987188832789998865049


Q ss_pred             HHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf             8899999626-97678678999999999984998899952578768999996799866345
Q 537021.9.peg.3   81 INEARTLIKD-GTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL  140 (142)
Q Consensus        81 ~~e~~~l~~~-~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i  140 (142)
T Consensus       220 ~~e~~~ll~~~~~i~~GMipKl~~a~~Al~~GV~~vhIidg~~~~aLL~ElfT~~G~GT~I  280 (280)
T cd04237         220 AQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI  280 (280)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             9999999984798887789999999999983999899905999971467760699986709