HHsearch alignment for GI: peg_394 and conserved domain: cd04237
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=0 Score=291.06 Aligned_cols=140 Identities=29% Similarity=0.555 Sum_probs=137.4
Q ss_pred CCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 98552013556999999997798499857431787320066147999999986251133432267633534555556338
Q 537021.9.peg.3 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLS 80 (142)
Q Consensus 1 ~g~~G~v~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~~i~~i~ 80 (142)
T Consensus 140 ~G~vG~v~~Vn~~~l~~ll~~~~iPVIspig~~~~G~~~NvNAD~~A~~iA~aL~A~kLi~ltdv~Gvl~~~~~~i~~l~ 219 (280)
T cd04237 140 FGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELT 219 (280)
T ss_pred CCCCCCCCEEEHHHHHHHHHCCCEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCCCCCCC
T ss_conf 46798302664999986875896589604318899988700899999999999744709987188832789998865049
Q ss_pred HHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf 8899999626-97678678999999999984998899952578768999996799866345
Q 537021.9.peg.3 81 INEARTLIKD-GTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 (142)
Q Consensus 81 ~~e~~~l~~~-~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i 140 (142)
T Consensus 220 ~~e~~~ll~~~~~i~~GMipKl~~a~~Al~~GV~~vhIidg~~~~aLL~ElfT~~G~GT~I 280 (280)
T cd04237 220 AQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9999999984798887789999999999983999899905999971467760699986709