HHsearch alignment for GI: peg_394 and conserved domain: cd04240
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.53 E-value=3.6e-14 Score=98.90 Aligned_cols=119 Identities=23% Similarity=0.441 Sum_probs=96.4
Q ss_pred HHHHHHHHHCCCEEEECCCCC----CCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHH
Q ss_conf 999999997798499857431----7873200661479999999862511334322676335345555563388899999
Q 537021.9.peg.3 12 RTILDLLIKSGIIPVIAPIAP----GYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTL 87 (142)
Q Consensus 12 ~~~i~~lL~~g~iPVi~pig~----~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~~i~~i~~~e~~~l 87 (142)
T Consensus 81 ~~~~~~~~~~~~~~v~lP~~~l~~~~~lp~sWdvtsDs~a~~~A~~l~a~~li~~~~vdGiy~~~~kl~~~i~~~~l~~- 159 (203)
T cd04240 81 LAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAELLG- 159 (203)
T ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCHHHHCC-
T ss_conf 4779999733891587115875158988878776618999999997598858998567755187505541158988648-
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf 62697678678999999999984998899952578768999996799866345
Q 537021.9.peg.3 88 IKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 (142)
Q Consensus 88 ~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i 140 (142)
T Consensus 160 ---~~~VD~~~~~~-----~~~~~i~-~~VvnG~~p~~i~~~l~g~~~~GT~I 203 (203)
T cd04240 160 ---ETSVDPAFPRL-----LTKYGIR-CYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred ---CCCHHHHHHHH-----HHHCCCE-EEEECCCCHHHHHHHHCCCCCCCCCC
T ss_conf ---87410778999-----9976963-99987998799999986898798579