HHsearch alignment for GI: peg_394 and conserved domain: cd04261

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.17  E-value=1.3e-10  Score=79.21  Aligned_cols=118  Identities=25%  Similarity=0.371  Sum_probs=86.8

Q ss_pred             EEEECHHHHHHHHHCCCEEEECC-CCCCCCCCEECC---CHHHHHHHHHHHHCHHHHHHHCCCCCEEECCC------CCC
Q ss_conf             13556999999997798499857-431787320066---14799999998625113343226763353455------555
Q 537021.9.peg.3    7 VIKVNRTILDLLIKSGIIPVIAP-IAPGYDGATYNI---NADTFAGAIAEKLNVIRLLFLTDVPGVLDKNR------QLI   76 (142)
Q Consensus         7 v~~vd~~~i~~lL~~g~iPVi~p-ig~~~~G~~~ni---n~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~------~~i   76 (142)
T Consensus       111 i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~tAai~A~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i  190 (239)
T cd04261         111 IIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKL  190 (239)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             68899999986402455589734655478884688279946889999999669888999818983275899968876773


Q ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf             6338889999962697678678999999999984998899952578768999996799866345
Q 537021.9.peg.3   77 SKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL  140 (142)
Q Consensus        77 ~~i~~~e~~~l~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i  140 (142)
T Consensus       191 ~~lsy~EA~ela~~Ga--kVlHp--~ai~p~~~~~Ip-i~i~nt----------~~p~-~GT~I  238 (239)
T cd04261         191 DEISYDEMLEMASLGA--KVLHP--RSVELAKKYGVP-LRVLSS----------FSEE-PGTLI  238 (239)
T ss_pred             CEECHHHHHHHHHCCC--CCCCH--HHHHHHHHCCCC-EEEEEC----------CCCC-CCCEE
T ss_conf             7707999999996897--31589--999999986994-899708----------9897-98885