RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.394_1 (142 letters) >gnl|CDD|179175 PRK00942, PRK00942, acetylglutamate kinase; Provisional. Length = 283 Score = 209 bits (534), Expect = 3e-55 Identities = 81/142 (57%), Positives = 107/142 (75%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 LGFVG V VN +L+ L+++G IPVI+PI G DG TYNINADT AGAIA L +L+ Sbjct: 141 LGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLI 200 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 LTDVPGVLD QLIS+L+ +EA LI+DG I+GGMIPK+E ++ A GV+SV I+DG Sbjct: 201 LLTDVPGVLDDKGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDG 260 Query: 121 KKPHSILMEIFTKNGSGTLLIP 142 + PH++L+E+FT G GT+++P Sbjct: 261 RVPHALLLELFTDEGIGTMIVP 282 >gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase. Length = 309 Score = 169 bits (429), Expect = 3e-43 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 3/142 (2%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 LGFVG V +V+ T+L L+ G IPVIA +A DG YNINADT AG IA L +L+ Sbjct: 165 LGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLI 224 Query: 61 FLTDVPGVL---DKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 LTDV GVL D L+ +L I R LI DG I+GGMIPK+E ++++ GVK+ I Sbjct: 225 LLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHI 284 Query: 118 LDGKKPHSILMEIFTKNGSGTL 139 +DG+ PHS+L+EI T G+GT+ Sbjct: 285 IDGRVPHSLLLEILTDEGAGTM 306 >gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. Length = 231 Score = 123 bits (310), Expect = 2e-29 Identities = 57/118 (48%), Positives = 84/118 (71%), Gaps = 1/118 (0%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 LG+VG + KVN+ +L+ L+K+G IPVI+ +A +G N+NADT AGA+A L +L+ Sbjct: 114 LGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLV 173 Query: 61 FLTDVPGVLDKNRQ-LISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 LTDVPG+L+ + Q LIS++ + E LI+ G I+GGMIPK+ +++A+ GVKSV I Sbjct: 174 LLTDVPGILNGDGQSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231 >gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase; Provisional. Length = 268 Score = 89.6 bits (223), Expect = 3e-19 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61 + G + +VN +L LL+K+G +PV+AP A +G N++ D A AIA L L+ Sbjct: 129 DYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVL 188 Query: 62 LTDVPGVL---DKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAIL 118 L+DVPG+L LI +++ EA L K GGM K+ + +A+E GV V I Sbjct: 189 LSDVPGLLRDPPDEGSLIERITPEEAEELSK--AAGGGMKKKVLMAAEAVEGGVGRVIIA 246 Query: 119 DGKKPHSILMEIFTKNGSGTLLIP 142 D I + G GT+++ Sbjct: 247 DANVDDPISAAL---AGEGTVIVN 267 >gnl|CDD|179989 PRK05279, PRK05279, N-acetylglutamate synthase; Validated. Length = 441 Score = 78.7 bits (195), Expect = 5e-16 Identities = 40/139 (28%), Positives = 79/139 (56%), Gaps = 3/139 (2%) Query: 5 GNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTD 64 G V +++ + + SG I +++P+ G ++N+ + A +A L +L+F T+ Sbjct: 151 GEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTE 210 Query: 65 VPGVLDKNRQLISKLSINEARTLIK---DGTISGGMIPKIETSIKAIENGVKSVAILDGK 121 GVLD++ +LI +LS NEA+ L++ DG + G + ++KA GV+ ++ Sbjct: 211 SQGVLDEDGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYA 270 Query: 122 KPHSILMEIFTKNGSGTLL 140 + ++L E+FT++G GT++ Sbjct: 271 EDGALLQELFTRDGIGTMI 289 >gnl|CDD|179860 PRK04531, PRK04531, acetylglutamate kinase; Provisional. Length = 398 Score = 74.3 bits (183), Expect = 1e-14 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 19 IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78 +++G IPVIA + G NINAD A + L +++FLT G+LD + +LIS Sbjct: 126 LRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISS 185 Query: 79 LSI-NEARTLIKDGTISGGMIPKIETSIKAIENGVK---SVAILDGKKPHSILMEIFTKN 134 +++ E L++ I+GGM K+E IK + + + SV+I P + E+FT Sbjct: 186 INLSTEYDHLMQQPWINGGMKLKLE-QIKELLDRLPLESSVSI---TSPSDLAKELFTHK 241 Query: 135 GSGTLL 140 GSGTL+ Sbjct: 242 GSGTLV 247 >gnl|CDD|162583 TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. Length = 429 Score = 72.1 bits (177), Expect = 5e-14 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 5 GNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTD 64 G + K++ + + +G I +++P+ G T+N++ + A ++A L +L++ T Sbjct: 143 GVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTL 202 Query: 65 VPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPH 124 PG+ D + L ++LS E +L + S + ++KA GV I+ + Sbjct: 203 SPGISDPDGTLAAELSPQEVESLAERLG-SETTRRLLSAAVKACRGGVHRSHIVSYAEDG 261 Query: 125 SILMEIFTKNGSGTLL 140 S+L E+FT++G GT + Sbjct: 262 SLLQELFTRDGIGTSI 277 >gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed. Length = 312 Score = 45.8 bits (109), Expect = 4e-06 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%) Query: 22 GIIPVIAPIAPGYDGATYNINADTFAGA-IAEKLNVIRLLFLTDVPGVL----DKNRQLI 76 G IPVI G I+ D FA +AE+++ L+ LT V V N+Q + Sbjct: 192 GGIPVIRD-DNTLKGVEAVIDKD-FASEKLAEQIDADLLIILTGVENVFINFNKPNQQKL 249 Query: 77 SKLSINEARTLIKDGTIS-GGMIPKIETSIKAIENGVKSVAIL 118 +++ EA+ I +G + G M+PK+E +I +E+G AI+ Sbjct: 250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAII 292 >gnl|CDD|183465 PRK12353, PRK12353, putative amino acid kinase; Reviewed. Length = 314 Score = 44.4 bits (106), Expect = 1e-05 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 46 FAGA-IAEKLNVIRLLFLTDVPGV-LDKNR---QLISKLSINEARTLIKDGTI-SGGMIP 99 FA A +AE ++ L+ LT V V ++ + + + +++++EA I++G G M+P Sbjct: 216 FASAKLAELVDADLLIILTAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQFAPGSMLP 275 Query: 100 KIETSIKAIENGVKSVAI 117 K+E +I +E+ AI Sbjct: 276 KVEAAISFVESRPGRKAI 293 >gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate synthetase; Reviewed. Length = 313 Score = 44.2 bits (105), Expect = 1e-05 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Query: 41 INADTFAGAIAEKLNVIRLLFLTDVPGVL----DKNRQLISKLSINEARTLIKDGTI-SG 95 I+ D + +AE+LN + LTDV V +++ + K+++ EA+ ++G +G Sbjct: 212 IDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAG 271 Query: 96 GMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 M PKI +I+ +ENG K I +K L + +GT +IP Sbjct: 272 SMGPKILAAIRFVENGGKRAIIASLEKAVEAL-----EGKTGTRIIP 313 >gnl|CDD|183464 PRK12352, PRK12352, putative carbamate kinase; Reviewed. Length = 316 Score = 42.9 bits (101), Expect = 3e-05 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 22 GIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVL----DKNRQLIS 77 G IPV+ A Y I+ D +A +++ L+ T V V +Q + Sbjct: 195 GGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALD 254 Query: 78 KLSINEARTLIKDGTI-SGGMIPKIETSIKAIENGVKSVAI 117 ++ I +++G G M+PKI S+ +E G K V I Sbjct: 255 RVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVII 295 >gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional. Length = 372 Score = 40.1 bits (95), Expect = 2e-04 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%) Query: 59 LLFLTDVPGVLDKN-R-----QLISKL-SINEARTLIKDGTIS----GGMIPKIETSIKA 107 L+ LTDV G+ + R +LI ++ I + + G S GGM K+E + A Sbjct: 169 LILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIA 228 Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 G+ V I G++P +L+ + GTL +P Sbjct: 229 TRAGI-PVVIASGREPD-VLLRLLAGEAVGTLFLP 261 >gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase. Length = 718 Score = 38.6 bits (90), Expect = 5e-04 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%) Query: 15 LDLLIKSGIIPVI-------APIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPG 67 ++ L+ +IP+ AP D + + D+ A +A +L L+ L+DV G Sbjct: 142 VESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEG 201 Query: 68 VL-----DKNRQLISKLSINEARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVAIL 118 + D + +LI + + I G S GGM K++ ++ A G+ V I Sbjct: 202 LYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGI-PVVIT 260 Query: 119 DGKKPHSILMEIFTKNGSGTL 139 G +I ++ GTL Sbjct: 261 SGYALDNI-RKVLRGERVGTL 280 >gnl|CDD|162019 TIGR00746, arcC, carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. Length = 310 Score = 37.8 bits (88), Expect = 0.001 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 24/128 (18%) Query: 17 LLIKSGIIPVIAPIAPG----YDGATYN-----INADTFAGAIAEKLNVIRLLFLTDVPG 67 L+++G+I VI+ G +GA I+ D + +AE++N L+ LTDV Sbjct: 177 TLVENGVI-VISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDA 235 Query: 68 VL----DKNRQLISKLSINEARTLIKDGTIS-GGMIPKIETSIKAIENGVK--------- 113 V + + + ++++ E K G + G M PK+E +I+ +E+G K Sbjct: 236 VYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLEN 295 Query: 114 SVAILDGK 121 +V L+GK Sbjct: 296 AVEALEGK 303 >gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed. Length = 307 Score = 36.7 bits (86), Expect = 0.002 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 19/120 (15%) Query: 12 RTILDLLIKSGIIPVIA------PIAPGYDGATYNINA----DTFAGAIAEKLNVIRLLF 61 R I L++ G + VI P+ DG + + A D A +AE+L+ LL Sbjct: 166 RPI-RWLLEKGHL-VICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLI 223 Query: 62 LTDVPGV-LD--KNRQ-LISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 LTDV V LD K Q I++ + +E R L G +G M PK+E + + + K I Sbjct: 224 LTDVDAVYLDWGKPTQRAIAQATPDELREL---GFAAGSMGPKVEAACEFVRATGKIAGI 280 >gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional. Length = 368 Score = 36.2 bits (84), Expect = 0.003 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 21/146 (14%) Query: 12 RTILDLLIKSGIIPVIAPIAPGYDGATYNI----NADTFAGAIAEKLNVIRLLFLTDVPG 67 R +++L++ GI+P+I D T + + D + +A + L+ L+D+ G Sbjct: 118 RNTINVLLERGILPIINE----NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDG 173 Query: 68 VLDKNRQ------LISKLS-INEARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVA 116 + D+N + LI +++ IN + G S GGM KI+ + A+ +G+++ Sbjct: 174 LYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETF- 232 Query: 117 ILDGKKPHSILMEIFTKNGSGTLLIP 142 I +G + +N GT P Sbjct: 233 IGNGFTADIFNQLLKGQN-PGTYFTP 257 >gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional. Length = 266 Score = 34.8 bits (81), Expect = 0.008 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%) Query: 59 LLFLTDVPGVLDKN------RQLISKLSINEARTLIKDGTIS-----GGMIPKIETSIKA 107 L+ L+D+ G+ DKN +L S+++ L G GGM+ K++ + Sbjct: 172 LIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFL 231 Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 +E G+K + + +G P IL + GTL P Sbjct: 232 MEAGIK-MVLANGFNPSDIL-DFLEGESIGTLFAP 264 >gnl|CDD|178420 PLN02825, PLN02825, amino-acid N-acetyltransferase. Length = 515 Score = 34.7 bits (80), Expect = 0.008 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61 G G V K++ + + + S I +++ + G N N A A A + +L+ Sbjct: 149 GATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLIC 208 Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIK 89 + D P +LD+N +LI +++ EA LI+ Sbjct: 209 IVDGP-ILDENGRLIRFMTLEEADMLIR 235 Score = 34.0 bits (78), Expect = 0.013 Identities = 13/30 (43%), Positives = 22/30 (73%) Query: 111 GVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 GV+ V +LDG +L+E+FT++G GT++ Sbjct: 333 GVQRVHLLDGTIEGVLLLELFTRDGMGTMI 362 >gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. Length = 401 Score = 33.5 bits (77), Expect = 0.018 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 19/94 (20%) Query: 8 IKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVIRL 59 I +L LL + GII V+A G+ GAT +D A +A L R+ Sbjct: 116 IATEERLLPLL-EEGIIVVVA----GFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170 Query: 60 LFLTDVPGVLD------KNRQLISKLSINEARTL 87 TDVPGV + + I K+S EA L Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALEL 204 >gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. Length = 441 Score = 32.7 bits (75), Expect = 0.032 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 18/87 (20%) Query: 15 LDLLIKSGIIPVIAPIAPGYDGATYN--IN------ADTFAGAIAEKLNVIRLLFLTDVP 66 L+ L++ GIIPV+A G+ GAT +D A +A L TDV Sbjct: 161 LEPLLEEGIIPVVA----GFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVD 216 Query: 67 GVLD------KNRQLISKLSINEARTL 87 G+ + + I ++S E L Sbjct: 217 GIYTTDPRIVPDARRIDEISYEEMLEL 243 >gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. Length = 363 Score = 32.7 bits (75), Expect = 0.036 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 44 DTFAGAIAEKLNVIRLLFLTDVPGVLDKN------RQLISKLS-INEARTLIKDGTIS-- 94 DT + +A + L+ LTDV G+ D + +LI + I + + + S Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSV 205 Query: 95 --GGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 GGM K++ + A GV V I G KP I + GTL Sbjct: 206 GTGGMRTKLQAADLATRAGVP-VIIASGSKPEKIA-DALEGAPVGTLFHA 253 >gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. Length = 221 Score = 32.3 bits (74), Expect = 0.046 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 44 DTFAGAIAEKLNVIRLLFLTDVPGVLDK------NRQLISKLSINEARTLIKDGTISGGM 97 D A +AE L+ T+V GV DK + + KL+ E ++ ++ G Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGS 177 Query: 98 IPKIE-TSIKAIENGVKSVAILDGKKPHSIL 127 ++ + K IE +++G+ P ++ Sbjct: 178 NEVVDPLAAKIIERSKIRTIVVNGRDPENLE 208 >gnl|CDD|180104 PRK05469, PRK05469, peptidase T; Provisional. Length = 408 Score = 28.9 bits (66), Expect = 0.51 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%) Query: 4 VGNVIKVNRTILDLLIKS----GIIPVIAPIAPGYDGA--------TYNINADTFAGA 49 + I+ + I+DL ++ GI P+I PI G DG+ NI F G Sbjct: 322 MREKIEPHPHIVDLAKQAMEDLGIEPIIKPIRGGTDGSQLSFMGLPCPNI----FTGG 375 >gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional. Length = 861 Score = 28.5 bits (64), Expect = 0.64 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 43 ADTFAGAIAEKLNVIRLLFLTDVPGVLDKN-RQ-----LISKLSINEARTL 87 +DT A A KL R+ TDVPG+ N ++ L+++L +EA+ + Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEI 265 >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. Length = 327 Score = 27.1 bits (60), Expect = 1.6 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Query: 9 KVNRTILDLLIKSGIIPVIAPIAPGYDGATYNI---NADTFAGAIAEKLNVIRLLFLTDV 65 K N IL +++SG IPVI +G + +D A A+ LN + ++DV Sbjct: 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDV 203 Query: 66 PGV------LDKNRQLISKLSINEARTLIKDG 91 G+ L + +LI LS E + K G Sbjct: 204 EGIFTADPKLVPSARLIPYLSYEEIKIAAKLG 235 >gnl|CDD|183556 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional. Length = 1310 Score = 26.4 bits (59), Expect = 2.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 112 VKSVAILDGKKPHSILMEIFTKN 134 +KSV LDGKKP + + T N Sbjct: 1159 LKSVERLDGKKPSVYIADTTTAN 1181 >gnl|CDD|185517 PTZ00217, PTZ00217, flap endonuclease-1; Provisional. Length = 393 Score = 26.5 bits (59), Expect = 2.7 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 104 SIKAIENGVKSVAILDGKKP 123 +I+ +E G+K V + DGK P Sbjct: 73 TIRLLEAGIKPVYVFDGKPP 92 >gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional. Length = 364 Score = 25.9 bits (57), Expect = 3.3 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLN 55 G +G+ I +N+ LL+KS IP++ I G+ Y ++ + I E L Sbjct: 120 GILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYDYFLDKEGIKKDIKEVLG 171 >gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. Length = 552 Score = 25.9 bits (57), Expect = 3.6 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 55 NVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKA-IENGVK 113 V+ L + D PGV++ + ++++K++ R + DG G + I A I N + Sbjct: 144 EVLGLAEVMDYPGVINADIEMLNKINSARKRNKVIDGHCPGLSGKLLNKYISAGISNDHE 203 Query: 114 SVAILDGKKPHSILMEIFTKNGS 136 S +I + ++ + M++ + GS Sbjct: 204 STSIEEAREKLRLGMKLMIREGS 226 >gnl|CDD|181484 PRK08577, PRK08577, hypothetical protein; Provisional. Length = 136 Score = 26.1 bits (58), Expect = 3.7 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%) Query: 51 AEKLNVIRLLFLTDVPGVLDKNRQLISKLSIN----EARTLIKDGTISGGMI---PKIET 103 +KL I L+ D PGVL K L+++ ++ E L + +I K + Sbjct: 53 GKKLVEIELVVE-DRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDI 111 Query: 104 SIKAIE------NGVKSVAI 117 ++ +E VK V I Sbjct: 112 DLEELEEELKKLEEVKEVEI 131 >gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed. Length = 403 Score = 26.0 bits (58), Expect = 3.7 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 20/92 (21%) Query: 7 VIKVNRT-ILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVI 57 +I+VN IL+ L + G + V+A G+ G T N + +DT A A+ L Sbjct: 118 IIEVNPDRILEAL-EEGDVVVVA----GFQGVTENGDITTLGRGGSDTTAAALGVALKAE 172 Query: 58 RLLFLTDVPGV------LDKNRQLISKLSINE 83 + TDV G+ + ++ +L+ +S NE Sbjct: 173 YVDIYTDVDGIMTADPRIVEDARLLDVVSYNE 204 >gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed. Length = 297 Score = 25.9 bits (57), Expect = 4.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Query: 22 GIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGV 68 G +PV A G+ I+ D A +AE++N L+ LTD V Sbjct: 185 GGVPVTEDGA----GSEAVIDKDLAAALLAEQINADGLVILTDADAV 227 >gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed. Length = 404 Score = 25.8 bits (58), Expect = 4.2 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 12/70 (17%) Query: 7 VIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVIR 58 + ++ + + + G + V+A G+ G + +DT A A+A L Sbjct: 113 ITDIDPSRIREALDEGDVVVVA----GFQGVDEDGEITTLGRGGSDTTAVALAAALKADE 168 Query: 59 LLFLTDVPGV 68 TDV GV Sbjct: 169 CEIYTDVDGV 178 >gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated. Length = 341 Score = 25.8 bits (57), Expect = 4.4 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Query: 14 ILDLLIKSGIIPVIAPIAPGYDGATYNI---NADTFAGAIAEKLNVIRLLFLTDVPGV-- 68 IL L++ G +PV+ +G + +D A A+ LN +L ++DV G+ Sbjct: 159 ILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYT 218 Query: 69 ----LDKNRQLISKLSINEARTLIKDG 91 L + +LI LS +EA K G Sbjct: 219 ADPKLVPSARLIPYLSYDEALIAAKLG 245 >gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated. Length = 448 Score = 25.6 bits (57), Expect = 4.6 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%) Query: 47 AGAIAEKLNVIRLLFLTDVPGV------LDKNRQLISKLSINEA 84 A +AE LN R+ TDVPG+ + + I ++S EA Sbjct: 203 AALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEA 246 >gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional. Length = 438 Score = 25.6 bits (57), Expect = 4.8 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 18 LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEK 53 +I++G++PV + TYNI+A A++ K Sbjct: 128 IIQNGLVPVFVDVELP----TYNIDASLLEAAVSPK 159 >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed. Length = 444 Score = 25.2 bits (56), Expect = 5.5 Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 81 INEARTLIKDGTISGGMIPKIETSIKAIEN 110 +NE + D I G I KI +SI A Sbjct: 12 VNEGKIFEGDVLIENGRIAKIASSISAKSA 41 >gnl|CDD|178063 PLN02444, PLN02444, HMP-P synthase. Length = 642 Score = 25.3 bits (55), Expect = 5.5 Identities = 10/23 (43%), Positives = 11/23 (47%) Query: 25 PVIAPIAPGYDGATYNINADTFA 47 P+ IAPGYD T I A Sbjct: 451 PLTTDIAPGYDHITSAIGAANIG 473 >gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional. Length = 253 Score = 25.2 bits (55), Expect = 6.3 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 67 GVLDKNRQLISKLSINEA 84 G+LD+N LIS +S E Sbjct: 171 GLLDENGNLISDISALEK 188 >gnl|CDD|178352 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase. Length = 544 Score = 25.2 bits (55), Expect = 6.6 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 10/29 (34%) Query: 77 SKLSINEAR----------TLIKDGTISG 95 K+SI+E + IKDGTISG Sbjct: 424 EKVSISEIKLTPKELAELIASIKDGTISG 452 >gnl|CDD|180111 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated. Length = 474 Score = 25.0 bits (56), Expect = 6.8 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Query: 61 FLTDVPGVLDKNRQLISKLSINEAR-----TLIKDGTISG 95 + ++ G+L++ I + I + LI DGTISG Sbjct: 346 LMGELLGLLNEEGIEIEESPITPEQLAELIKLIDDGTISG 385 >gnl|CDD|177786 PLN00192, PLN00192, aldehyde oxidase. Length = 1344 Score = 25.1 bits (55), Expect = 7.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 15 LDLLIKSGIIPVIAPIAP 32 LD+LI +GI P I+PI P Sbjct: 877 LDILINAGISPDISPIMP 894 >gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional. Length = 587 Score = 24.9 bits (55), Expect = 8.1 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 44 DTFAGAIAEKLNVIRLLFLTDVPGVLD------KNRQLISKLSINE 83 DT A A+A L TDVPGVL QL+ ++S +E Sbjct: 156 DTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDE 201 >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated. Length = 366 Score = 25.0 bits (54), Expect = 8.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Query: 15 LDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61 L LL K I V+ + Y A++ + + EKLNV+RL F Sbjct: 205 LPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPF 251 >gnl|CDD|178138 PLN02523, PLN02523, galacturonosyltransferase. Length = 559 Score = 24.8 bits (54), Expect = 8.3 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 80 SINEARTLIKDGTISGGMI 98 ++NE RTL K GT+ G+I Sbjct: 467 NLNENRTLWKLGTLPPGLI 485 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.141 0.388 Gapped Lambda K H 0.267 0.0761 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,299,678 Number of extensions: 143019 Number of successful extensions: 414 Number of sequences better than 10.0: 1 Number of HSP's gapped: 398 Number of HSP's successfully gapped: 73 Length of query: 142 Length of database: 5,994,473 Length adjustment: 84 Effective length of query: 58 Effective length of database: 4,179,401 Effective search space: 242405258 Effective search space used: 242405258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (23.7 bits)