RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.394_1
         (142 letters)



>gnl|CDD|179175 PRK00942, PRK00942, acetylglutamate kinase; Provisional.
          Length = 283

 Score =  209 bits (534), Expect = 3e-55
 Identities = 81/142 (57%), Positives = 107/142 (75%)

Query: 1   LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
           LGFVG V  VN  +L+ L+++G IPVI+PI  G DG TYNINADT AGAIA  L   +L+
Sbjct: 141 LGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLI 200

Query: 61  FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
            LTDVPGVLD   QLIS+L+ +EA  LI+DG I+GGMIPK+E ++ A   GV+SV I+DG
Sbjct: 201 LLTDVPGVLDDKGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDG 260

Query: 121 KKPHSILMEIFTKNGSGTLLIP 142
           + PH++L+E+FT  G GT+++P
Sbjct: 261 RVPHALLLELFTDEGIGTMIVP 282


>gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase.
          Length = 309

 Score =  169 bits (429), Expect = 3e-43
 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 3/142 (2%)

Query: 1   LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
           LGFVG V +V+ T+L  L+  G IPVIA +A   DG  YNINADT AG IA  L   +L+
Sbjct: 165 LGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLI 224

Query: 61  FLTDVPGVL---DKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
            LTDV GVL   D    L+ +L I   R LI DG I+GGMIPK+E  ++++  GVK+  I
Sbjct: 225 LLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHI 284

Query: 118 LDGKKPHSILMEIFTKNGSGTL 139
           +DG+ PHS+L+EI T  G+GT+
Sbjct: 285 IDGRVPHSLLLEILTDEGAGTM 306


>gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase.  This model describes
           N-acetylglutamate kinases (ArgB) of many prokaryotes and
           the N-acetylglutamate kinase domains of multifunctional
           proteins from yeasts. This enzyme is the second step in
           the "acetylated" ornithine biosynthesis pathway. A
           related group of enzymes representing the first step of
           the pathway contain a homologous domain and are excluded
           from this model.
          Length = 231

 Score =  123 bits (310), Expect = 2e-29
 Identities = 57/118 (48%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 1   LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
           LG+VG + KVN+ +L+ L+K+G IPVI+ +A   +G   N+NADT AGA+A  L   +L+
Sbjct: 114 LGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLV 173

Query: 61  FLTDVPGVLDKNRQ-LISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
            LTDVPG+L+ + Q LIS++ + E   LI+ G I+GGMIPK+  +++A+  GVKSV I
Sbjct: 174 LLTDVPGILNGDGQSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231


>gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
           Provisional.
          Length = 268

 Score = 89.6 bits (223), Expect = 3e-19
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 2   GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61
            + G + +VN  +L LL+K+G +PV+AP A   +G   N++ D  A AIA  L    L+ 
Sbjct: 129 DYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVL 188

Query: 62  LTDVPGVL---DKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAIL 118
           L+DVPG+L        LI +++  EA  L K     GGM  K+  + +A+E GV  V I 
Sbjct: 189 LSDVPGLLRDPPDEGSLIERITPEEAEELSK--AAGGGMKKKVLMAAEAVEGGVGRVIIA 246

Query: 119 DGKKPHSILMEIFTKNGSGTLLIP 142
           D      I   +    G GT+++ 
Sbjct: 247 DANVDDPISAAL---AGEGTVIVN 267


>gnl|CDD|179989 PRK05279, PRK05279, N-acetylglutamate synthase; Validated.
          Length = 441

 Score = 78.7 bits (195), Expect = 5e-16
 Identities = 40/139 (28%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 5   GNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTD 64
           G V +++   +   + SG I +++P+     G ++N+  +  A  +A  L   +L+F T+
Sbjct: 151 GEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTE 210

Query: 65  VPGVLDKNRQLISKLSINEARTLIK---DGTISGGMIPKIETSIKAIENGVKSVAILDGK 121
             GVLD++ +LI +LS NEA+ L++   DG  + G    +  ++KA   GV+   ++   
Sbjct: 211 SQGVLDEDGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYA 270

Query: 122 KPHSILMEIFTKNGSGTLL 140
           +  ++L E+FT++G GT++
Sbjct: 271 EDGALLQELFTRDGIGTMI 289


>gnl|CDD|179860 PRK04531, PRK04531, acetylglutamate kinase; Provisional.
          Length = 398

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 8/126 (6%)

Query: 19  IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78
           +++G IPVIA +     G   NINAD  A  +   L   +++FLT   G+LD + +LIS 
Sbjct: 126 LRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISS 185

Query: 79  LSI-NEARTLIKDGTISGGMIPKIETSIKAIENGVK---SVAILDGKKPHSILMEIFTKN 134
           +++  E   L++   I+GGM  K+E  IK + + +    SV+I     P  +  E+FT  
Sbjct: 186 INLSTEYDHLMQQPWINGGMKLKLE-QIKELLDRLPLESSVSI---TSPSDLAKELFTHK 241

Query: 135 GSGTLL 140
           GSGTL+
Sbjct: 242 GSGTLV 247


>gnl|CDD|162583 TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltransferase.  This
           model represents a clade of amino-acid
           N-acetyltransferases acting mainly on glutamate in the
           first step of the "acetylated" ornithine biosynthesis
           pathway. For this reason it is also called
           N-acetylglutamate synthase. The enzyme may also act on
           aspartate.
          Length = 429

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 5   GNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTD 64
           G + K++   +   + +G I +++P+     G T+N++ +  A ++A  L   +L++ T 
Sbjct: 143 GVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTL 202

Query: 65  VPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPH 124
            PG+ D +  L ++LS  E  +L +    S      +  ++KA   GV    I+   +  
Sbjct: 203 SPGISDPDGTLAAELSPQEVESLAERLG-SETTRRLLSAAVKACRGGVHRSHIVSYAEDG 261

Query: 125 SILMEIFTKNGSGTLL 140
           S+L E+FT++G GT +
Sbjct: 262 SLLQELFTRDGIGTSI 277


>gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed.
          Length = 312

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 22  GIIPVIAPIAPGYDGATYNINADTFAGA-IAEKLNVIRLLFLTDVPGVL----DKNRQLI 76
           G IPVI        G    I+ D FA   +AE+++   L+ LT V  V       N+Q +
Sbjct: 192 GGIPVIRD-DNTLKGVEAVIDKD-FASEKLAEQIDADLLIILTGVENVFINFNKPNQQKL 249

Query: 77  SKLSINEARTLIKDGTIS-GGMIPKIETSIKAIENGVKSVAIL 118
             +++ EA+  I +G  + G M+PK+E +I  +E+G    AI+
Sbjct: 250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAII 292


>gnl|CDD|183465 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
          Length = 314

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 46  FAGA-IAEKLNVIRLLFLTDVPGV-LDKNR---QLISKLSINEARTLIKDGTI-SGGMIP 99
           FA A +AE ++   L+ LT V  V ++  +   + + +++++EA   I++G    G M+P
Sbjct: 216 FASAKLAELVDADLLIILTAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQFAPGSMLP 275

Query: 100 KIETSIKAIENGVKSVAI 117
           K+E +I  +E+     AI
Sbjct: 276 KVEAAISFVESRPGRKAI 293


>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
           synthetase; Reviewed.
          Length = 313

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 41  INADTFAGAIAEKLNVIRLLFLTDVPGVL----DKNRQLISKLSINEARTLIKDGTI-SG 95
           I+ D  +  +AE+LN    + LTDV  V       +++ + K+++ EA+   ++G   +G
Sbjct: 212 IDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAG 271

Query: 96  GMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
            M PKI  +I+ +ENG K   I   +K    L     +  +GT +IP
Sbjct: 272 SMGPKILAAIRFVENGGKRAIIASLEKAVEAL-----EGKTGTRIIP 313


>gnl|CDD|183464 PRK12352, PRK12352, putative carbamate kinase; Reviewed.
          Length = 316

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 22  GIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVL----DKNRQLIS 77
           G IPV+   A  Y      I+ D     +A +++   L+  T V  V        +Q + 
Sbjct: 195 GGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALD 254

Query: 78  KLSINEARTLIKDGTI-SGGMIPKIETSIKAIENGVKSVAI 117
           ++ I      +++G    G M+PKI  S+  +E G K V I
Sbjct: 255 RVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVII 295


>gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
          Length = 372

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 59  LLFLTDVPGVLDKN-R-----QLISKL-SINEARTLIKDGTIS----GGMIPKIETSIKA 107
           L+ LTDV G+   + R     +LI ++  I +    +  G  S    GGM  K+E +  A
Sbjct: 169 LILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIA 228

Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
              G+  V I  G++P  +L+ +      GTL +P
Sbjct: 229 TRAGI-PVVIASGREPD-VLLRLLAGEAVGTLFLP 261


>gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
          Length = 718

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%)

Query: 15  LDLLIKSGIIPVI-------APIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPG 67
           ++ L+   +IP+           AP  D +    + D+ A  +A +L    L+ L+DV G
Sbjct: 142 VESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEG 201

Query: 68  VL-----DKNRQLISKLSINEARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVAIL 118
           +      D + +LI      + +  I  G  S    GGM  K++ ++ A   G+  V I 
Sbjct: 202 LYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGI-PVVIT 260

Query: 119 DGKKPHSILMEIFTKNGSGTL 139
            G    +I  ++      GTL
Sbjct: 261 SGYALDNI-RKVLRGERVGTL 280


>gnl|CDD|162019 TIGR00746, arcC, carbamate kinase.  The seed alignment for this
           model includes experimentally confirmed examples from a
           set of phylogenetically distinct species. In a
           neighbor-joining tree constructed from an alignment of
           candidate carbamate kinases and several acetylglutamate
           kinases, the latter group forms a clear outgroup which
           roots the tree of carbamate kinase-like proteins. This
           analysis suggests that in E. coli, the ArcC paralog YqeA
           may be a second isozyme, while the paralog YahI branches
           as an outlier and is less likely to be an authentic
           carbamate kinase. The homolog from Mycoplasma pneumoniae
           likewise branches outside the set containing known
           carbamate kinases and also scores below the trusted
           cutoff.
          Length = 310

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 17  LLIKSGIIPVIAPIAPG----YDGATYN-----INADTFAGAIAEKLNVIRLLFLTDVPG 67
            L+++G+I VI+    G     +GA        I+ D  +  +AE++N   L+ LTDV  
Sbjct: 177 TLVENGVI-VISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDA 235

Query: 68  VL----DKNRQLISKLSINEARTLIKDGTIS-GGMIPKIETSIKAIENGVK--------- 113
           V       + + + ++++ E     K G  + G M PK+E +I+ +E+G K         
Sbjct: 236 VYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLEN 295

Query: 114 SVAILDGK 121
           +V  L+GK
Sbjct: 296 AVEALEGK 303


>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
          Length = 307

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 12  RTILDLLIKSGIIPVIA------PIAPGYDGATYNINA----DTFAGAIAEKLNVIRLLF 61
           R I   L++ G + VI       P+    DG  + + A    D  A  +AE+L+   LL 
Sbjct: 166 RPI-RWLLEKGHL-VICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLI 223

Query: 62  LTDVPGV-LD--KNRQ-LISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
           LTDV  V LD  K  Q  I++ + +E R L   G  +G M PK+E + + +    K   I
Sbjct: 224 LTDVDAVYLDWGKPTQRAIAQATPDELREL---GFAAGSMGPKVEAACEFVRATGKIAGI 280


>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
          Length = 368

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 12  RTILDLLIKSGIIPVIAPIAPGYDGATYNI----NADTFAGAIAEKLNVIRLLFLTDVPG 67
           R  +++L++ GI+P+I       D  T +     + D  +  +A   +   L+ L+D+ G
Sbjct: 118 RNTINVLLERGILPIINE----NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDG 173

Query: 68  VLDKNRQ------LISKLS-INEARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVA 116
           + D+N +      LI +++ IN     +  G  S    GGM  KI+ +  A+ +G+++  
Sbjct: 174 LYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETF- 232

Query: 117 ILDGKKPHSILMEIFTKNGSGTLLIP 142
           I +G         +  +N  GT   P
Sbjct: 233 IGNGFTADIFNQLLKGQN-PGTYFTP 257


>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
          Length = 266

 Score = 34.8 bits (81), Expect = 0.008
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 59  LLFLTDVPGVLDKN------RQLISKLSINEARTLIKDGTIS-----GGMIPKIETSIKA 107
           L+ L+D+ G+ DKN       +L S+++      L   G        GGM+ K++ +   
Sbjct: 172 LIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFL 231

Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
           +E G+K + + +G  P  IL +       GTL  P
Sbjct: 232 MEAGIK-MVLANGFNPSDIL-DFLEGESIGTLFAP 264


>gnl|CDD|178420 PLN02825, PLN02825, amino-acid N-acetyltransferase.
          Length = 515

 Score = 34.7 bits (80), Expect = 0.008
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 2   GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61
           G  G V K++ + +   + S  I +++ +     G   N N    A A A  +   +L+ 
Sbjct: 149 GATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLIC 208

Query: 62  LTDVPGVLDKNRQLISKLSINEARTLIK 89
           + D P +LD+N +LI  +++ EA  LI+
Sbjct: 209 IVDGP-ILDENGRLIRFMTLEEADMLIR 235



 Score = 34.0 bits (78), Expect = 0.013
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 111 GVKSVAILDGKKPHSILMEIFTKNGSGTLL 140
           GV+ V +LDG     +L+E+FT++G GT++
Sbjct: 333 GVQRVHLLDGTIEGVLLLELFTRDGMGTMI 362


>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class. 
           The Lys-sensitive enzyme of Bacillus subtilis resembles
           the E. coli form but is an alpha 2/beta 2
           heterotetramer, where the beta subunit is translated
           from an in-phase alternative initiator at Met-246. The
           protein slr0657 from Synechocystis PCC6803 is extended
           by a duplication of the C-terminal region corresponding
           to the beta chain. Incorporation of a second copy of the
           C-terminal domain may be quite common in this subgroup
           of aspartokinases.
          Length = 401

 Score = 33.5 bits (77), Expect = 0.018
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 19/94 (20%)

Query: 8   IKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVIRL 59
           I     +L LL + GII V+A    G+ GAT            +D  A  +A  L   R+
Sbjct: 116 IATEERLLPLL-EEGIIVVVA----GFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170

Query: 60  LFLTDVPGVLD------KNRQLISKLSINEARTL 87
              TDVPGV        +  + I K+S  EA  L
Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALEL 204


>gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase.  The Lys-sensitive enzyme
           of Bacillus subtilis resembles the E. coli form but is
           an alpha 2/beta 2 heterotetramer, where the beta subunit
           is translated from an in-phase alternative initiator at
           Met-246. This may be a feature of a number of closely
           related forms, including a paralog from B. subtilis.
          Length = 441

 Score = 32.7 bits (75), Expect = 0.032
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 18/87 (20%)

Query: 15  LDLLIKSGIIPVIAPIAPGYDGATYN--IN------ADTFAGAIAEKLNVIRLLFLTDVP 66
           L+ L++ GIIPV+A    G+ GAT            +D  A  +A  L        TDV 
Sbjct: 161 LEPLLEEGIIPVVA----GFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVD 216

Query: 67  GVLD------KNRQLISKLSINEARTL 87
           G+         + + I ++S  E   L
Sbjct: 217 GIYTTDPRIVPDARRIDEISYEEMLEL 243


>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase.  Bacterial ProB proteins hit
           the full length of this model, but the ProB-like domain
           of delta 1-pyrroline-5-carboxylate synthetase does not
           hit the C-terminal 100 residues of this model. The noise
           cutoff is set low enough to hit delta
           1-pyrroline-5-carboxylate synthetase and other partial
           matches to this family.
          Length = 363

 Score = 32.7 bits (75), Expect = 0.036
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 44  DTFAGAIAEKLNVIRLLFLTDVPGVLDKN------RQLISKLS-INEARTLIKDGTIS-- 94
           DT +  +A  +    L+ LTDV G+ D +       +LI  +  I +    +   + S  
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSV 205

Query: 95  --GGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
             GGM  K++ +  A   GV  V I  G KP  I  +       GTL   
Sbjct: 206 GTGGMRTKLQAADLATRAGVP-VIIASGSKPEKIA-DALEGAPVGTLFHA 253


>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative.  This family
           consists of the archaeal and spirochete proteins most
           closely related to bacterial uridylate kinases
           (TIGR02075), an enzyme involved in pyrimidine
           biosynthesis. Members are likely, but not known, to be
           functionally equivalent to their bacterial counterparts.
           However, substantial sequence differences suggest that
           regulatory mechanisms may be different; the bacterial
           form is allosterically regulated by GTP.
          Length = 221

 Score = 32.3 bits (74), Expect = 0.046
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 44  DTFAGAIAEKLNVIRLLFLTDVPGVLDK------NRQLISKLSINEARTLIKDGTISGGM 97
           D  A  +AE      L+  T+V GV DK      + +   KL+  E   ++   ++  G 
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGS 177

Query: 98  IPKIE-TSIKAIENGVKSVAILDGKKPHSIL 127
              ++  + K IE       +++G+ P ++ 
Sbjct: 178 NEVVDPLAAKIIERSKIRTIVVNGRDPENLE 208


>gnl|CDD|180104 PRK05469, PRK05469, peptidase T; Provisional.
          Length = 408

 Score = 28.9 bits (66), Expect = 0.51
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)

Query: 4   VGNVIKVNRTILDLLIKS----GIIPVIAPIAPGYDGA--------TYNINADTFAGA 49
           +   I+ +  I+DL  ++    GI P+I PI  G DG+          NI    F G 
Sbjct: 322 MREKIEPHPHIVDLAKQAMEDLGIEPIIKPIRGGTDGSQLSFMGLPCPNI----FTGG 375


>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
           decarboxylase protein; Provisional.
          Length = 861

 Score = 28.5 bits (64), Expect = 0.64
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 43  ADTFAGAIAEKLNVIRLLFLTDVPGVLDKN-RQ-----LISKLSINEARTL 87
           +DT A   A KL   R+   TDVPG+   N ++     L+++L  +EA+ +
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEI 265


>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
           putative.  This family consists of proteins restricted
           to and found as paralogous pairs (typically close
           together) in species of Pyrococcus, a hyperthermophilic
           archaeal genus. Members are always found close to other
           genes of threonine biosynthesis and appear to represent
           the Pyrococcal form of aspartate kinase. Alignment to
           aspartokinase III from E. coli shows that 300 N-terminal
           and 20 C-terminal amino acids are homologous, but the
           form in Pyrococcus lacks ~ 100 amino acids in between.
          Length = 327

 Score = 27.1 bits (60), Expect = 1.6
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 9   KVNRTILDLLIKSGIIPVIAPIAPGYDGATYNI---NADTFAGAIAEKLNVIRLLFLTDV 65
           K N  IL  +++SG IPVI       +G    +    +D  A A+   LN   +  ++DV
Sbjct: 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDV 203

Query: 66  PGV------LDKNRQLISKLSINEARTLIKDG 91
            G+      L  + +LI  LS  E +   K G
Sbjct: 204 EGIFTADPKLVPSARLIPYLSYEEIKIAAKLG 235


>gnl|CDD|183556 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
          Length = 1310

 Score = 26.4 bits (59), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 112  VKSVAILDGKKPHSILMEIFTKN 134
            +KSV  LDGKKP   + +  T N
Sbjct: 1159 LKSVERLDGKKPSVYIADTTTAN 1181


>gnl|CDD|185517 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
          Length = 393

 Score = 26.5 bits (59), Expect = 2.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 104 SIKAIENGVKSVAILDGKKP 123
           +I+ +E G+K V + DGK P
Sbjct: 73  TIRLLEAGIKPVYVFDGKPP 92


>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
          Length = 364

 Score = 25.9 bits (57), Expect = 3.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2   GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLN 55
           G +G+ I +N+    LL+KS  IP++  I  G+    Y ++ +     I E L 
Sbjct: 120 GILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYDYFLDKEGIKKDIKEVLG 171


>gnl|CDD|130246 TIGR01178, ade, adenine deaminase.  The family described by this
           model includes an experimentally characterized adenine
           deaminase of Bacillus subtilis. It also include a member
           from Methanobacterium thermoautotrophicum, in which
           adenine deaminase activity has been detected.
          Length = 552

 Score = 25.9 bits (57), Expect = 3.6
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 55  NVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKA-IENGVK 113
            V+ L  + D PGV++ + ++++K++    R  + DG   G     +   I A I N  +
Sbjct: 144 EVLGLAEVMDYPGVINADIEMLNKINSARKRNKVIDGHCPGLSGKLLNKYISAGISNDHE 203

Query: 114 SVAILDGKKPHSILMEIFTKNGS 136
           S +I + ++   + M++  + GS
Sbjct: 204 STSIEEAREKLRLGMKLMIREGS 226


>gnl|CDD|181484 PRK08577, PRK08577, hypothetical protein; Provisional.
          Length = 136

 Score = 26.1 bits (58), Expect = 3.7
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 51  AEKLNVIRLLFLTDVPGVLDKNRQLISKLSIN----EARTLIKDGTISGGMI---PKIET 103
            +KL  I L+   D PGVL K   L+++  ++    E   L +       +I    K + 
Sbjct: 53  GKKLVEIELVVE-DRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDI 111

Query: 104 SIKAIE------NGVKSVAI 117
            ++ +E        VK V I
Sbjct: 112 DLEELEEELKKLEEVKEVEI 131


>gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed.
          Length = 403

 Score = 26.0 bits (58), Expect = 3.7
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 20/92 (21%)

Query: 7   VIKVNRT-ILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVI 57
           +I+VN   IL+ L + G + V+A    G+ G T N +        +DT A A+   L   
Sbjct: 118 IIEVNPDRILEAL-EEGDVVVVA----GFQGVTENGDITTLGRGGSDTTAAALGVALKAE 172

Query: 58  RLLFLTDVPGV------LDKNRQLISKLSINE 83
            +   TDV G+      + ++ +L+  +S NE
Sbjct: 173 YVDIYTDVDGIMTADPRIVEDARLLDVVSYNE 204


>gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed.
          Length = 297

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 22  GIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGV 68
           G +PV    A    G+   I+ D  A  +AE++N   L+ LTD   V
Sbjct: 185 GGVPVTEDGA----GSEAVIDKDLAAALLAEQINADGLVILTDADAV 227


>gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed.
          Length = 404

 Score = 25.8 bits (58), Expect = 4.2
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   VIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNIN--------ADTFAGAIAEKLNVIR 58
           +  ++ + +   +  G + V+A    G+ G   +          +DT A A+A  L    
Sbjct: 113 ITDIDPSRIREALDEGDVVVVA----GFQGVDEDGEITTLGRGGSDTTAVALAAALKADE 168

Query: 59  LLFLTDVPGV 68
               TDV GV
Sbjct: 169 CEIYTDVDGV 178


>gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated.
          Length = 341

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 14  ILDLLIKSGIIPVIAPIAPGYDGATYNI---NADTFAGAIAEKLNVIRLLFLTDVPGV-- 68
           IL  L++ G +PV+       +G    +    +D  A A+   LN   +L ++DV G+  
Sbjct: 159 ILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYT 218

Query: 69  ----LDKNRQLISKLSINEARTLIKDG 91
               L  + +LI  LS +EA    K G
Sbjct: 219 ADPKLVPSARLIPYLSYDEALIAAKLG 245


>gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated.
          Length = 448

 Score = 25.6 bits (57), Expect = 4.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 47  AGAIAEKLNVIRLLFLTDVPGV------LDKNRQLISKLSINEA 84
           A  +AE LN  R+   TDVPG+      +    + I ++S  EA
Sbjct: 203 AALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEA 246


>gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
           Provisional.
          Length = 438

 Score = 25.6 bits (57), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 18  LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEK 53
           +I++G++PV   +       TYNI+A     A++ K
Sbjct: 128 IIQNGLVPVFVDVELP----TYNIDASLLEAAVSPK 159


>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
          Length = 444

 Score = 25.2 bits (56), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 81  INEARTLIKDGTISGGMIPKIETSIKAIEN 110
           +NE +    D  I  G I KI +SI A   
Sbjct: 12  VNEGKIFEGDVLIENGRIAKIASSISAKSA 41


>gnl|CDD|178063 PLN02444, PLN02444, HMP-P synthase.
          Length = 642

 Score = 25.3 bits (55), Expect = 5.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 25  PVIAPIAPGYDGATYNINADTFA 47
           P+   IAPGYD  T  I A    
Sbjct: 451 PLTTDIAPGYDHITSAIGAANIG 473


>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional.
          Length = 253

 Score = 25.2 bits (55), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 67  GVLDKNRQLISKLSINEA 84
           G+LD+N  LIS +S  E 
Sbjct: 171 GLLDENGNLISDISALEK 188


>gnl|CDD|178352 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase.
          Length = 544

 Score = 25.2 bits (55), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 10/29 (34%)

Query: 77  SKLSINEAR----------TLIKDGTISG 95
            K+SI+E +            IKDGTISG
Sbjct: 424 EKVSISEIKLTPKELAELIASIKDGTISG 452


>gnl|CDD|180111 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B;
           Validated.
          Length = 474

 Score = 25.0 bits (56), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 61  FLTDVPGVLDKNRQLISKLSINEAR-----TLIKDGTISG 95
            + ++ G+L++    I +  I   +      LI DGTISG
Sbjct: 346 LMGELLGLLNEEGIEIEESPITPEQLAELIKLIDDGTISG 385


>gnl|CDD|177786 PLN00192, PLN00192, aldehyde oxidase.
          Length = 1344

 Score = 25.1 bits (55), Expect = 7.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 15  LDLLIKSGIIPVIAPIAP 32
           LD+LI +GI P I+PI P
Sbjct: 877 LDILINAGISPDISPIMP 894


>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional.
          Length = 587

 Score = 24.9 bits (55), Expect = 8.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 44  DTFAGAIAEKLNVIRLLFLTDVPGVLD------KNRQLISKLSINE 83
           DT A A+A  L        TDVPGVL          QL+ ++S +E
Sbjct: 156 DTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDE 201


>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
           Validated.
          Length = 366

 Score = 25.0 bits (54), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 15  LDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61
           L LL K   I V+   +  Y  A++ +        + EKLNV+RL F
Sbjct: 205 LPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPF 251


>gnl|CDD|178138 PLN02523, PLN02523, galacturonosyltransferase.
          Length = 559

 Score = 24.8 bits (54), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 80  SINEARTLIKDGTISGGMI 98
           ++NE RTL K GT+  G+I
Sbjct: 467 NLNENRTLWKLGTLPPGLI 485


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.141    0.388 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,299,678
Number of extensions: 143019
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 73
Length of query: 142
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,179,401
Effective search space: 242405258
Effective search space used: 242405258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.7 bits)