RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.394_1
(142 letters)
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 134 bits (338), Expect = 8e-33
Identities = 67/139 (48%), Positives = 98/139 (70%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+G VG V VN +L++L+K IPVIAPI G +G +YNINAD AG +AE L +L+
Sbjct: 155 IGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLM 214
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
LT++ G++DK Q+++ LS + LI DGTI GGM+PKI +++A++ GV S I+DG
Sbjct: 215 LLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274
Query: 121 KKPHSILMEIFTKNGSGTL 139
+ P+++L+EIFT +G GTL
Sbjct: 275 RVPNAVLLEIFTDSGVGTL 293
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
regulation of arginine biosynthesis, nitrogen
metabolism, kinase, transferase, transcription; HET: ARG
ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Length = 298
Score = 128 bits (322), Expect = 5e-31
Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
LGFVG V +V+ ++L L+ G IPVIA +A G YNINADT AG +A L +L+
Sbjct: 154 LGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLI 213
Query: 61 FLTDVPGVLDKNR---QLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
LTDV G+L+ LI ++ I + +I+DG ++GGMIPK++ I+++ GVK+ +I
Sbjct: 214 LLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASI 273
Query: 118 LDGKKPHSILMEIFTKNGSGTL 139
+DG++ HS+L EI + G+GT+
Sbjct: 274 IDGRRQHSLLHEIMSDEGAGTM 295
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 126 bits (317), Expect = 2e-30
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+ + G + K + L + +G I + P+ Y G T+N++ A ++A L +L+
Sbjct: 164 MEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLV 223
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
+LT G+ + L LS EA++L + + I +++ A+E GV V IL+G
Sbjct: 224 YLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRRL--ISSAVAALEGGVHRVQILNG 281
Query: 121 KKPHSILMEIFTKNGSGTLLIP 142
S+L E+FT+NG GT +
Sbjct: 282 AADGSLLQELFTRNGIGTSIAK 303
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
kinase, phosphoryl group transfer, arginine metabolism,
transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
SCOP: c.73.1.2
Length = 282
Score = 124 bits (312), Expect = 8e-30
Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+G+VG V KVN IL LI++ IPVIAP+ G DG +YNINADT A IA+ L +L+
Sbjct: 139 IGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLI 198
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
LTDV GVL + +LIS L+ +EA LI+DGT++GGMIPK+E ++ A+ GV +V I++G
Sbjct: 199 LLTDVDGVLK-DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIING 257
Query: 121 KKPHSILMEIFTKNGSGTL 139
H+IL+EIF++ G GT+
Sbjct: 258 GLEHAILLEIFSRKGIGTM 276
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
regulation, transferase, cyanobacteria, transcription;
HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Length = 321
Score = 121 bits (304), Expect = 7e-29
Identities = 63/145 (43%), Positives = 98/145 (67%), Gaps = 3/145 (2%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+GFVG V VN +++ L++ G IPVI+ +A +G ++NINADT AG IA LN +L+
Sbjct: 166 IGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLI 225
Query: 61 FLTDVPGVLDK---NRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
LTD G+L+ LI +L+I ++R LI G + GGMIPK++ I+++ GV++ I
Sbjct: 226 LLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHI 285
Query: 118 LDGKKPHSILMEIFTKNGSGTLLIP 142
+DG+ PH++L+EIFT G GT+++
Sbjct: 286 IDGRIPHALLLEIFTDAGIGTMIVG 310
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
protein structure initiative, NYSGXRC, PSI; 2.80A
{Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2
Length = 299
Score = 111 bits (278), Expect = 7e-26
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFL 62
VG+V +VN + L+ +G IPV++ +AP DG +NINADT A A+AE L +LL L
Sbjct: 150 LVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLML 209
Query: 63 TDVPGVLDKN---RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119
TD+ G+ + L+S++ L+ T+ GM+PK+E ++A+ GV S I+D
Sbjct: 210 TDIDGLYTRWPDRDSLVSEIDTGTLAQLLP--TLELGMVPKVEACLRAVIGGVPSAHIID 267
Query: 120 GKKPHSILMEIFTKNGSGTLLIP 142
G+ H +L+E+FT G+GT ++
Sbjct: 268 GRVTHCVLVELFTDAGTGTKVVR 290
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A*
Length = 258
Score = 98.2 bits (243), Expect = 6e-22
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61
G VG + +++ L+++G +PV++ I +G N+NAD A A+A L +
Sbjct: 120 GHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLI-L 178
Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGK 121
L+DV G+LD Q I++++ +A LI+ G I+ GMI K+ ++ A + V I +
Sbjct: 179 LSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWR 238
Query: 122 KPHSILMEIFTKNGSGTLLI 141
+ +F GT ++
Sbjct: 239 HAEQLP-ALFNGMPMGTRIL 257
>2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.92A {Thermus thermophilus HB8}
Length = 269
Score = 97.0 bits (240), Expect = 1e-21
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+ G V +VN+ +LDLL+++G +PV+ P A Y+ N + D A +A L+
Sbjct: 129 GDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALV 188
Query: 61 FLTDVPGVLDK---NRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
+L++VPG+L + L+ ++ + G M K+ +++A++ GVK V
Sbjct: 189 YLSNVPGLLARYPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVF 248
Query: 118 LDGKKPHSILMEIFTKNGSGTL 139
DG+ + I + +G GT+
Sbjct: 249 ADGRVENPIRRAL---SGEGTV 267
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target,
transferase; 3.00A {Giardia lamblia atcc 50803}
Length = 317
Score = 95.6 bits (237), Expect = 3e-21
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPG--------YDGATYNINADTFAGAIAE 52
+ + V ++ LI + ++ + G I+ D +A+
Sbjct: 167 VPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAK 226
Query: 53 KLNVIRLLFLTDVPGVL----DKNRQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKA 107
LN L+ LTDV + + + ++ ++E L KDG +G M PK+ +I+
Sbjct: 227 TLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEF 286
Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
+ K I L GT +I
Sbjct: 287 TQATGKMSIITSLSTAVDAL-----NGKCGTRIIK 316
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase,
hyperthermophiles, ADP site, phosphoryl group transfer;
HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Length = 314
Score = 95.7 bits (237), Expect = 4e-21
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAP--------GYDGATYNINADTFAGAIAE 52
+ V + L++ G+I + + G I+ D +AE
Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 224
Query: 53 KLNVIRLLFLTDVPGVLDK----NRQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKA 107
++N + LTDV G Q + ++ + E R ++G +G M PK+ +I+
Sbjct: 225 EVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRF 284
Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
IE G + I +K L + +GT ++P
Sbjct: 285 IEWGGERAIIAHLEKAVEAL-----EGKTGTQVLP 314
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP
synthesys, open alpha/beta sheet, phosphotransferase,
transferase; HET: ADP; 1.39A {Enterococcus faecalis}
PDB: 1b7b_A 2we4_A*
Length = 310
Score = 94.5 bits (234), Expect = 7e-21
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+ D++ S I + G I+ D + +AE ++ L+
Sbjct: 167 IDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALV 226
Query: 61 FLTDVPGVL----DKNRQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENGVKSV 115
LT V V + + ++ +++ E + G G M+PKIE +I+ +E+
Sbjct: 227 ILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQ 286
Query: 116 AILDGKKPHSILMEIFTKNGSGTL 139
AI+ L + GT+
Sbjct: 287 AIITS---LENLGSMSGDEIVGTV 307
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 90.6 bits (224), Expect = 1e-19
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 13/151 (8%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAP---GYDGATYNINADTFAGAIAEKLNVI 57
G + + +++ ++ G++PV+ I+ D + +L
Sbjct: 115 RAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPE 174
Query: 58 RLLFLTDVPGVLDKN---------RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAI 108
R++ TDV GV +N +I L E+ + ++GGM+ KI +
Sbjct: 175 RVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLA 234
Query: 109 ENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139
E GV+S I++ P +I + + GT
Sbjct: 235 EKGVESE-IINAAVPGNIERALLGEEVRGTR 264
>1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP
synthesys, acylphosphate-making enzymes, open alpha/beta
sheet; 2.80A {Enterococcus faecium} SCOP: c.73.1.1
Length = 310
Score = 87.7 bits (216), Expect = 9e-19
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%)
Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPI------APGYDGATYNINADTFAGAIAEKLNV 56
+ ++ LIK+ II + G I+ D + +AE ++
Sbjct: 163 SPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDA 222
Query: 57 IRLLFLTDVPGVLDKNR----QLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENG 111
L+ LT V V + ++ +++ E + G G M+PKIE +I+ +E+
Sbjct: 223 DALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQ 282
Query: 112 VKSVAILDGKKPHSILMEIFTKNGSGTLL 140
AI+ L + GT++
Sbjct: 283 PNKQAIIT---SLENLGSMSGDEIVGTVV 308
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
pathway, isopentenyl phsophate kinase, beta-alpha
sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
{Thermoplasma acidophilum} PDB: 3lkk_A*
Length = 249
Score = 86.2 bits (213), Expect = 3e-18
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGA-IAEKLNVIRLL 60
+ + + T L I +G +PV D +Y I + A +AE L +
Sbjct: 105 SALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAV 164
Query: 61 FLTDVPGVLDKNR------QLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKS 114
FLTDV G+ K+ L+ + N +++ ++GG+ K E+ +K +
Sbjct: 165 FLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQND-VTGGIGKKFESMVKMKSSVKNG 223
Query: 115 VAILDGKKPHSILMEIFTKNGSGTL 139
V +++G P I +I ++ GT+
Sbjct: 224 VYLINGNHPERIG-DIGKESFIGTV 247
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.80A {Aeropyrum pernix K1}
Length = 316
Score = 83.4 bits (205), Expect = 2e-17
Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 11 NRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLD 70
+ + + G +PV+ + ++ D + +A +LN L+ LTDVPGV
Sbjct: 184 AESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV 243
Query: 71 KN----RQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKAIENGVKSVAILDGKKPHS 125
+ + + + +E + +++G G M PK+E +I +E K I ++
Sbjct: 244 NYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQ 303
Query: 126 ILMEIFTKNGSGTLLIP 142
+L +GT+++
Sbjct: 304 VL-----SLQAGTVVML 315
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
transferase, methanocald jannaschii, isopentenyl
monophosphate; 2.05A {Methanocaldococcus jannaschii}
PDB: 3k4y_A* 3k52_A* 3k56_A*
Length = 266
Score = 80.9 bits (199), Expect = 9e-17
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTF-AGAIAEKLNVIRLLF 61
G+ + + + + ++K ++PVI D Y I + +A +L +L+
Sbjct: 124 VFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILY 183
Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIKDGT------ISGGMIPKIETSIKAIENGVKSV 115
TDV GVL N + I ++ N ++ + ++GGM KIE I
Sbjct: 184 ATDVDGVLIDN-KPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIE----MIRKNKCRG 238
Query: 116 AILDGKKPHSILMEIFTKNGSGTL 139
+ +G K ++I + GT
Sbjct: 239 FVFNGNKANNIY-KALLGEVEGTE 261
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
metal binding protein; HET: ATP; 1.60A {Azotobacter
vinelandii}
Length = 270
Score = 73.5 bits (180), Expect = 2e-14
Identities = 18/137 (13%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Query: 6 NVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDV 65
+ + ++ ++ ++ SG+ P + P +G D +AE+ +++F+ D
Sbjct: 132 SAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDE 191
Query: 66 PGVLDKNRQLISKLSINEART---LIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKK 122
G+ N + + + + G + + +++ ++ + V +++G
Sbjct: 192 DGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVRE-VQVVNGLV 250
Query: 123 PHSILMEIFTKNGSGTL 139
P ++ GT+
Sbjct: 251 PGNLT-RALAGEHVGTI 266
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A*
Length = 286
Score = 69.1 bits (168), Expect = 4e-13
Identities = 14/154 (9%), Positives = 43/154 (27%), Gaps = 17/154 (11%)
Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIA-PIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61
+ ++ +L ++ G +PV+A G + ++D + + +
Sbjct: 128 LRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVV 187
Query: 62 LTDVPGVL----DKNRQLISKLSINEARTLIKD------GTISGGMIPKIETSIKAIENG 111
+ ++ ++ +G M K++ + G
Sbjct: 188 TLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRG 247
Query: 112 VKSVAILDGKKPHSI-----LMEIFTKNGSGTLL 140
+ I+ G + + + T +
Sbjct: 248 AECF-IMRGDPGSDLEFLTAPFSSWPAHVRSTRI 280
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
structure, metal binding protein; HET: ATP; 1.60A
{Azotobacter vinelandii}
Length = 276
Score = 62.4 bits (151), Expect = 4e-11
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 18 LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLD------- 70
++ S P PG ADT A +A+ L + +V G+
Sbjct: 147 VVGSAFPPYHHHEFPG--SRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204
Query: 71 -KNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILME 129
+ + + S + + ++ + + + +++G P +
Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMA----TARHIERVQ-VVNGLVPGRLT-A 258
Query: 130 IFTKNGSGTLLIP 142
GTL+
Sbjct: 259 ALRGEHVGTLIRT 271
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
jejuni} SCOP: c.73.1.3
Length = 251
Score = 48.9 bits (115), Expect = 4e-07
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 19 IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78
I GI+P+I + D+ + + L+ L+D+ G DKN S
Sbjct: 118 INLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSD 177
Query: 79 LSINEARTLIKDGTI-----------SGGMIPKIETSIKAIENGVKSVAILDGKKPHSIL 127
E T IK+ + +GG++ K++ + +E+ K + + G
Sbjct: 178 AKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKK-MFLASGFDLSVAK 236
Query: 128 MEIFT-KNGSGTL 139
+ K GTL
Sbjct: 237 TFLLEDKQIGGTL 249
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3
PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Length = 247
Score = 38.0 bits (87), Expect = 7e-04
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 42 NADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKI 101
D+ A ++ +L T V GV D + + + + + +
Sbjct: 143 TTDSTACLRGIEIEADVVLKATKVDGVYDCDPA-KNPDAKLYKNLSYAEVIDKELKVMDL 201
Query: 102 ETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139
A ++G+ + + + KP ++ ++ T GT
Sbjct: 202 SAFTLARDHGMP-IRVFNMGKPGALR-QVVTGTEEGTT 237
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase,
amino-acid biosynthesis, transferase, feedback
regulation, PUA domain; HET: RGP; 2.5A {Escherichia
coli} PDB: 2j5t_A*
Length = 367
Score = 32.0 bits (72), Expect = 0.058
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 12 RTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDK 71
R L L+ + ++PVI + D + A +LL LTD G+
Sbjct: 118 RDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTA 177
Query: 72 NRQLISKLSINE-------ARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVAILDG 120
+ + + + + A I ++S GGM K++ + A G+ ++ I G
Sbjct: 178 DPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTI-IAAG 236
Query: 121 KKPHSILMEIFTKNGSGT 138
KP ++ ++ GT
Sbjct: 237 SKPG-VIGDVMEGISVGT 253
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 29.2 bits (65), Expect = 0.32
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 24/91 (26%)
Query: 43 ADTFAGAIAEKLNVIRLL---FLTDVPGVLDKNRQLISKLSINEAR-----TLIKDGTIS 94
A A+ L + L L DV G+L + + + ++ L + G ++
Sbjct: 318 ARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVT 377
Query: 95 GGMIPKIETSIKAIENGVKSV--AILDGKKP 123
++ KS+ +L+G+ P
Sbjct: 378 S----RV----------AKSLLPEVLEGQDP 394
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural
genomics, protein structure initiative; 2.40A {Aquifex
aeolicus VF5}
Length = 162
Score = 26.6 bits (58), Expect = 2.0
Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 49 AIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78
A+ +++ ++LL + D+ GVL + ++
Sbjct: 1 ALRDRVKKLKLLIM-DIDGVLTDGKLYYTE 29
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.7
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 98 IPKIETSIK--AIENGVKSVAILDGKKPHSILME 129
+ K++ S+K A ++ ++AI K ME
Sbjct: 22 LKKLQASLKLYA-DDSAPALAI---KAT----ME 47
Score = 25.0 bits (53), Expect = 6.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 37 ATYNINADTFAGAIAEK 53
A+ + AD A A+A K
Sbjct: 27 ASLKLYADDSAPALAIK 43
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274,
hydrolase, lipopolysaccharide biosynthesis, magnesium,
structural genomics; 1.95A {Yersinia pestis CO92}
Length = 211
Score = 26.0 bits (57), Expect = 3.4
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 47 AGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDG 91
A + ++ IRLL DV GV+ + ++DG
Sbjct: 39 ADDVIQRAANIRLLIC-DVDGVMSDGLIYMGNQGEELKAFNVRDG 82
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 25.6 bits (55), Expect = 3.9
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37
+ T DL+++ PV P G++G+
Sbjct: 43 MCHT--DLIVRDQKYPVPLPAVLGHEGS 68
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
coenzyme A biosynthesis, cytoplasm, metal-binding,
nucleotide-binding, potassium; HET: PAU; 1.51A
{Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
3bf1_A* 3bf3_A* 2gtd_A
Length = 249
Score = 25.6 bits (56), Expect = 4.4
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 86 TLIKDGTISGGMI-PKIETSIKAIENGVKSVAILDGKKPHSIL 127
L+ +G+ GG I P + ++ G + +++ K ++
Sbjct: 136 DLVVNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVV 178
>2gwn_A Dihydroorotase; zinc-binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis W83}
Length = 452
Score = 25.6 bits (54), Expect = 4.7
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 81 INEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGK 121
NE +T I G I +I ++ + + +++
Sbjct: 14 TNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECS 54
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 25.3 bits (54), Expect = 6.0
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37
V T D+ + P+ G++ A
Sbjct: 45 VCPT--DINATDPKKKALFPVVLGHECA 70
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 25.0 bits (54), Expect = 6.0
Identities = 6/61 (9%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
+ ++ L + + + G +S + + +A +G + I++
Sbjct: 727 TVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSARIAREALA--RAAASGDAPLTIIER 784
Query: 121 K 121
+
Sbjct: 785 E 785
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A
{Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 24.9 bits (53), Expect = 6.2
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37
+ + D + IIP P+ G++
Sbjct: 46 ICGS--DSSVLKEIIPSKFPVILGHEAV 71
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal
coordination, NAD, zinc, inhibition, acetylation,
metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP:
b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A*
1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A*
1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A*
3bto_A* 5adh_A* ...
Length = 374
Score = 25.0 bits (53), Expect = 6.6
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37
+ R+ D + SG + P+ G++ A
Sbjct: 45 ICRS--DDHVVSGTLVTPLPVIAGHEAA 70
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 24.6 bits (53), Expect = 7.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIK---DGTISGGMIPKI 101
L L + + L ++E R IK G IS + I
Sbjct: 494 LAYTLRELRREGHDVDGLGLDELRDAIKLLEVGKISKDALRDI 536
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET:
DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A*
3f2d_A*
Length = 1041
Score = 24.3 bits (52), Expect = 9.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 8 IKVNRTILDLLIKSG 22
K+++T+L+ L G
Sbjct: 1002 GKLSKTLLEYLESRG 1016
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.141 0.388
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,177,985
Number of extensions: 52909
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 44
Length of query: 142
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 59
Effective length of database: 3,680,978
Effective search space: 217177702
Effective search space used: 217177702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)