RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.394_1 (142 letters) >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Length = 300 Score = 134 bits (338), Expect = 8e-33 Identities = 67/139 (48%), Positives = 98/139 (70%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 +G VG V VN +L++L+K IPVIAPI G +G +YNINAD AG +AE L +L+ Sbjct: 155 IGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLM 214 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 LT++ G++DK Q+++ LS + LI DGTI GGM+PKI +++A++ GV S I+DG Sbjct: 215 LLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274 Query: 121 KKPHSILMEIFTKNGSGTL 139 + P+++L+EIFT +G GTL Sbjct: 275 RVPNAVLLEIFTDSGVGTL 293 >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 Score = 128 bits (322), Expect = 5e-31 Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 3/142 (2%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 LGFVG V +V+ ++L L+ G IPVIA +A G YNINADT AG +A L +L+ Sbjct: 154 LGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLI 213 Query: 61 FLTDVPGVLDKNR---QLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 LTDV G+L+ LI ++ I + +I+DG ++GGMIPK++ I+++ GVK+ +I Sbjct: 214 LLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASI 273 Query: 118 LDGKKPHSILMEIFTKNGSGTL 139 +DG++ HS+L EI + G+GT+ Sbjct: 274 IDGRRQHSLLHEIMSDEGAGTM 295 >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456 Score = 126 bits (317), Expect = 2e-30 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 + + G + K + L + +G I + P+ Y G T+N++ A ++A L +L+ Sbjct: 164 MEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLV 223 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 +LT G+ + L LS EA++L + + I +++ A+E GV V IL+G Sbjct: 224 YLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRRL--ISSAVAALEGGVHRVQILNG 281 Query: 121 KKPHSILMEIFTKNGSGTLLIP 142 S+L E+FT+NG GT + Sbjct: 282 AADGSLLQELFTRNGIGTSIAK 303 >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Length = 282 Score = 124 bits (312), Expect = 8e-30 Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 +G+VG V KVN IL LI++ IPVIAP+ G DG +YNINADT A IA+ L +L+ Sbjct: 139 IGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLI 198 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 LTDV GVL + +LIS L+ +EA LI+DGT++GGMIPK+E ++ A+ GV +V I++G Sbjct: 199 LLTDVDGVLK-DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIING 257 Query: 121 KKPHSILMEIFTKNGSGTL 139 H+IL+EIF++ G GT+ Sbjct: 258 GLEHAILLEIFSRKGIGTM 276 >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Length = 321 Score = 121 bits (304), Expect = 7e-29 Identities = 63/145 (43%), Positives = 98/145 (67%), Gaps = 3/145 (2%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 +GFVG V VN +++ L++ G IPVI+ +A +G ++NINADT AG IA LN +L+ Sbjct: 166 IGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLI 225 Query: 61 FLTDVPGVLDK---NRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 LTD G+L+ LI +L+I ++R LI G + GGMIPK++ I+++ GV++ I Sbjct: 226 LLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHI 285 Query: 118 LDGKKPHSILMEIFTKNGSGTLLIP 142 +DG+ PH++L+EIFT G GT+++ Sbjct: 286 IDGRIPHALLLEIFTDAGIGTMIVG 310 >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2 Length = 299 Score = 111 bits (278), Expect = 7e-26 Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 5/143 (3%) Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFL 62 VG+V +VN + L+ +G IPV++ +AP DG +NINADT A A+AE L +LL L Sbjct: 150 LVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLML 209 Query: 63 TDVPGVLDKN---RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119 TD+ G+ + L+S++ L+ T+ GM+PK+E ++A+ GV S I+D Sbjct: 210 TDIDGLYTRWPDRDSLVSEIDTGTLAQLLP--TLELGMVPKVEACLRAVIGGVPSAHIID 267 Query: 120 GKKPHSILMEIFTKNGSGTLLIP 142 G+ H +L+E+FT G+GT ++ Sbjct: 268 GRVTHCVLVELFTDAGTGTKVVR 290 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* Length = 258 Score = 98.2 bits (243), Expect = 6e-22 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61 G VG + +++ L+++G +PV++ I +G N+NAD A A+A L + Sbjct: 120 GHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLI-L 178 Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGK 121 L+DV G+LD Q I++++ +A LI+ G I+ GMI K+ ++ A + V I + Sbjct: 179 LSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWR 238 Query: 122 KPHSILMEIFTKNGSGTLLI 141 + +F GT ++ Sbjct: 239 HAEQLP-ALFNGMPMGTRIL 257 >2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Thermus thermophilus HB8} Length = 269 Score = 97.0 bits (240), Expect = 1e-21 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 + G V +VN+ +LDLL+++G +PV+ P A Y+ N + D A +A L+ Sbjct: 129 GDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALV 188 Query: 61 FLTDVPGVLDK---NRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 +L++VPG+L + L+ ++ + G M K+ +++A++ GVK V Sbjct: 189 YLSNVPGLLARYPDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVF 248 Query: 118 LDGKKPHSILMEIFTKNGSGTL 139 DG+ + I + +G GT+ Sbjct: 249 ADGRVENPIRRAL---SGEGTV 267 >3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 Score = 95.6 bits (237), Expect = 3e-21 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 18/155 (11%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPG--------YDGATYNINADTFAGAIAE 52 + + V ++ LI + ++ + G I+ D +A+ Sbjct: 167 VPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAK 226 Query: 53 KLNVIRLLFLTDVPGVL----DKNRQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKA 107 LN L+ LTDV + + + ++ ++E L KDG +G M PK+ +I+ Sbjct: 227 TLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEF 286 Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 + K I L GT +I Sbjct: 287 TQATGKMSIITSLSTAVDAL-----NGKCGTRIIK 316 >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 Score = 95.7 bits (237), Expect = 4e-21 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAP--------GYDGATYNINADTFAGAIAE 52 + V + L++ G+I + + G I+ D +AE Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 224 Query: 53 KLNVIRLLFLTDVPGVLDK----NRQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKA 107 ++N + LTDV G Q + ++ + E R ++G +G M PK+ +I+ Sbjct: 225 EVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRF 284 Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 IE G + I +K L + +GT ++P Sbjct: 285 IEWGGERAIIAHLEKAVEAL-----EGKTGTQVLP 314 >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 Score = 94.5 bits (234), Expect = 7e-21 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 8/144 (5%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 + D++ S I + G I+ D + +AE ++ L+ Sbjct: 167 IDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALV 226 Query: 61 FLTDVPGVL----DKNRQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENGVKSV 115 LT V V + + ++ +++ E + G G M+PKIE +I+ +E+ Sbjct: 227 ILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQ 286 Query: 116 AILDGKKPHSILMEIFTKNGSGTL 139 AI+ L + GT+ Sbjct: 287 AIITS---LENLGSMSGDEIVGTV 307 >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 Score = 90.6 bits (224), Expect = 1e-19 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 13/151 (8%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAP---GYDGATYNINADTFAGAIAEKLNVI 57 G + + +++ ++ G++PV+ I+ D + +L Sbjct: 115 RAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPE 174 Query: 58 RLLFLTDVPGVLDKN---------RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAI 108 R++ TDV GV +N +I L E+ + ++GGM+ KI + Sbjct: 175 RVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLA 234 Query: 109 ENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139 E GV+S I++ P +I + + GT Sbjct: 235 EKGVESE-IINAAVPGNIERALLGEEVRGTR 264 >1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP synthesys, acylphosphate-making enzymes, open alpha/beta sheet; 2.80A {Enterococcus faecium} SCOP: c.73.1.1 Length = 310 Score = 87.7 bits (216), Expect = 9e-19 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%) Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPI------APGYDGATYNINADTFAGAIAEKLNV 56 + ++ LIK+ II + G I+ D + +AE ++ Sbjct: 163 SPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDA 222 Query: 57 IRLLFLTDVPGVLDKNR----QLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENG 111 L+ LT V V + ++ +++ E + G G M+PKIE +I+ +E+ Sbjct: 223 DALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQ 282 Query: 112 VKSVAILDGKKPHSILMEIFTKNGSGTLL 140 AI+ L + GT++ Sbjct: 283 PNKQAIIT---SLENLGSMSGDEIVGTVV 308 >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 Score = 86.2 bits (213), Expect = 3e-18 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 9/145 (6%) Query: 2 GFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGA-IAEKLNVIRLL 60 + + + T L I +G +PV D +Y I + A +AE L + Sbjct: 105 SALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAV 164 Query: 61 FLTDVPGVLDKNR------QLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKS 114 FLTDV G+ K+ L+ + N +++ ++GG+ K E+ +K + Sbjct: 165 FLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQND-VTGGIGKKFESMVKMKSSVKNG 223 Query: 115 VAILDGKKPHSILMEIFTKNGSGTL 139 V +++G P I +I ++ GT+ Sbjct: 224 VYLINGNHPERIG-DIGKESFIGTV 247 >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Length = 316 Score = 83.4 bits (205), Expect = 2e-17 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 11 NRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLD 70 + + + G +PV+ + ++ D + +A +LN L+ LTDVPGV Sbjct: 184 AESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV 243 Query: 71 KN----RQLISKLSINEARTLIKDGTI-SGGMIPKIETSIKAIENGVKSVAILDGKKPHS 125 + + + + +E + +++G G M PK+E +I +E K I ++ Sbjct: 244 NYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQ 303 Query: 126 ILMEIFTKNGSGTLLIP 142 +L +GT+++ Sbjct: 304 VL-----SLQAGTVVML 315 >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 Score = 80.9 bits (199), Expect = 9e-17 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 13/144 (9%) Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTF-AGAIAEKLNVIRLLF 61 G+ + + + + ++K ++PVI D Y I + +A +L +L+ Sbjct: 124 VFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILY 183 Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIKDGT------ISGGMIPKIETSIKAIENGVKSV 115 TDV GVL N + I ++ N ++ + ++GGM KIE I Sbjct: 184 ATDVDGVLIDN-KPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIE----MIRKNKCRG 238 Query: 116 AILDGKKPHSILMEIFTKNGSGTL 139 + +G K ++I + GT Sbjct: 239 FVFNGNKANNIY-KALLGEVEGTE 261 >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 Score = 73.5 bits (180), Expect = 2e-14 Identities = 18/137 (13%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 6 NVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDV 65 + + ++ ++ ++ SG+ P + P +G D +AE+ +++F+ D Sbjct: 132 SAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDE 191 Query: 66 PGVLDKNRQLISKLSINEART---LIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKK 122 G+ N + + + + G + + +++ ++ + V +++G Sbjct: 192 DGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVRE-VQVVNGLV 250 Query: 123 PHSILMEIFTKNGSGTL 139 P ++ GT+ Sbjct: 251 PGNLT-RALAGEHVGTI 266 >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* Length = 286 Score = 69.1 bits (168), Expect = 4e-13 Identities = 14/154 (9%), Positives = 43/154 (27%), Gaps = 17/154 (11%) Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIA-PIAPGYDGATYNINADTFAGAIAEKLNVIRLLF 61 + ++ +L ++ G +PV+A G + ++D + + + Sbjct: 128 LRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVV 187 Query: 62 LTDVPGVL----DKNRQLISKLSINEARTLIKD------GTISGGMIPKIETSIKAIENG 111 + ++ ++ +G M K++ + G Sbjct: 188 TLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRG 247 Query: 112 VKSVAILDGKKPHSI-----LMEIFTKNGSGTLL 140 + I+ G + + + T + Sbjct: 248 AECF-IMRGDPGSDLEFLTAPFSSWPAHVRSTRI 280 >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 Score = 62.4 bits (151), Expect = 4e-11 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 16/133 (12%) Query: 18 LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLD------- 70 ++ S P PG ADT A +A+ L + +V G+ Sbjct: 147 VVGSAFPPYHHHEFPG--SRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204 Query: 71 -KNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILME 129 + + + S + + ++ + + + +++G P + Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMA----TARHIERVQ-VVNGLVPGRLT-A 258 Query: 130 IFTKNGSGTLLIP 142 GTL+ Sbjct: 259 ALRGEHVGTLIRT 271 >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 Score = 48.9 bits (115), Expect = 4e-07 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 19 IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78 I GI+P+I + D+ + + L+ L+D+ G DKN S Sbjct: 118 INLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSD 177 Query: 79 LSINEARTLIKDGTI-----------SGGMIPKIETSIKAIENGVKSVAILDGKKPHSIL 127 E T IK+ + +GG++ K++ + +E+ K + + G Sbjct: 178 AKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKK-MFLASGFDLSVAK 236 Query: 128 MEIFT-KNGSGTL 139 + K GTL Sbjct: 237 TFLLEDKQIGGTL 249 >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 Score = 38.0 bits (87), Expect = 7e-04 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 3/98 (3%) Query: 42 NADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKI 101 D+ A ++ +L T V GV D + + + + + + Sbjct: 143 TTDSTACLRGIEIEADVVLKATKVDGVYDCDPA-KNPDAKLYKNLSYAEVIDKELKVMDL 201 Query: 102 ETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139 A ++G+ + + + KP ++ ++ T GT Sbjct: 202 SAFTLARDHGMP-IRVFNMGKPGALR-QVVTGTEEGTT 237 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* Length = 367 Score = 32.0 bits (72), Expect = 0.058 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 12 RTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDK 71 R L L+ + ++PVI + D + A +LL LTD G+ Sbjct: 118 RDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTA 177 Query: 72 NRQLISKLSINE-------ARTLIKDGTIS----GGMIPKIETSIKAIENGVKSVAILDG 120 + + + + + A I ++S GGM K++ + A G+ ++ I G Sbjct: 178 DPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTI-IAAG 236 Query: 121 KKPHSILMEIFTKNGSGT 138 KP ++ ++ GT Sbjct: 237 SKPG-VIGDVMEGISVGT 253 >3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 466 Score = 29.2 bits (65), Expect = 0.32 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 24/91 (26%) Query: 43 ADTFAGAIAEKLNVIRLL---FLTDVPGVLDKNRQLISKLSINEAR-----TLIKDGTIS 94 A A+ L + L L DV G+L + + + ++ L + G ++ Sbjct: 318 ARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVT 377 Query: 95 GGMIPKIETSIKAIENGVKSV--AILDGKKP 123 ++ KS+ +L+G+ P Sbjct: 378 S----RV----------AKSLLPEVLEGQDP 394 >2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural genomics, protein structure initiative; 2.40A {Aquifex aeolicus VF5} Length = 162 Score = 26.6 bits (58), Expect = 2.0 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 49 AIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78 A+ +++ ++LL + D+ GVL + ++ Sbjct: 1 ALRDRVKKLKLLIM-DIDGVLTDGKLYYTE 29 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 2.7 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 10/34 (29%) Query: 98 IPKIETSIK--AIENGVKSVAILDGKKPHSILME 129 + K++ S+K A ++ ++AI K ME Sbjct: 22 LKKLQASLKLYA-DDSAPALAI---KAT----ME 47 Score = 25.0 bits (53), Expect = 6.4 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 37 ATYNINADTFAGAIAEK 53 A+ + AD A A+A K Sbjct: 27 ASLKLYADDSAPALAIK 43 >3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274, hydrolase, lipopolysaccharide biosynthesis, magnesium, structural genomics; 1.95A {Yersinia pestis CO92} Length = 211 Score = 26.0 bits (57), Expect = 3.4 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 47 AGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDG 91 A + ++ IRLL DV GV+ + ++DG Sbjct: 39 ADDVIQRAANIRLLIC-DVDGVMSDGLIYMGNQGEELKAFNVRDG 82 >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 Score = 25.6 bits (55), Expect = 3.9 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37 + T DL+++ PV P G++G+ Sbjct: 43 MCHT--DLIVRDQKYPVPLPAVLGHEGS 68 >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Length = 249 Score = 25.6 bits (56), Expect = 4.4 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 86 TLIKDGTISGGMI-PKIETSIKAIENGVKSVAILDGKKPHSIL 127 L+ +G+ GG I P + ++ G + +++ K ++ Sbjct: 136 DLVVNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVV 178 >2gwn_A Dihydroorotase; zinc-binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: KCX GOL; 1.85A {Porphyromonas gingivalis W83} Length = 452 Score = 25.6 bits (54), Expect = 4.7 Identities = 7/41 (17%), Positives = 16/41 (39%) Query: 81 INEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGK 121 NE +T I G I +I ++ + + +++ Sbjct: 14 TNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECS 54 >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 Score = 25.3 bits (54), Expect = 6.0 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%) Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37 V T D+ + P+ G++ A Sbjct: 45 VCPT--DINATDPKKKALFPVVLGHECA 70 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Score = 25.0 bits (54), Expect = 6.0 Identities = 6/61 (9%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 + ++ L + + + G +S + + +A +G + I++ Sbjct: 727 TVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSARIAREALA--RAAASGDAPLTIIER 784 Query: 121 K 121 + Sbjct: 785 E 785 >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 Score = 24.9 bits (53), Expect = 6.2 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%) Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37 + + D + IIP P+ G++ Sbjct: 46 ICGS--DSSVLKEIIPSKFPVILGHEAV 71 >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 5adh_A* ... Length = 374 Score = 25.0 bits (53), Expect = 6.6 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%) Query: 10 VNRTILDLLIKSGIIPVIAPIAPGYDGA 37 + R+ D + SG + P+ G++ A Sbjct: 45 ICRS--DDHVVSGTLVTPLPVIAGHEAA 70 >2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619 Score = 24.6 bits (53), Expect = 7.8 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%) Query: 62 LTDVPGVLDKNRQLISKLSINEARTLIK---DGTISGGMIPKI 101 L L + + L ++E R IK G IS + I Sbjct: 494 LAYTLRELRREGHDVDGLGLDELRDAIKLLEVGKISKDALRDI 536 >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Length = 1041 Score = 24.3 bits (52), Expect = 9.9 Identities = 5/15 (33%), Positives = 10/15 (66%) Query: 8 IKVNRTILDLLIKSG 22 K+++T+L+ L G Sbjct: 1002 GKLSKTLLEYLESRG 1016 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.141 0.388 Gapped Lambda K H 0.267 0.0512 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,177,985 Number of extensions: 52909 Number of successful extensions: 257 Number of sequences better than 10.0: 1 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 44 Length of query: 142 Length of database: 5,693,230 Length adjustment: 83 Effective length of query: 59 Effective length of database: 3,680,978 Effective search space: 217177702 Effective search space used: 217177702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.3 bits)