RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.394_1
(142 letters)
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 300
Score = 133 bits (335), Expect = 7e-33
Identities = 67/139 (48%), Positives = 98/139 (70%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+G VG V VN +L++L+K IPVIAPI G +G +YNINAD AG +AE L +L+
Sbjct: 155 IGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLM 214
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
LT++ G++DK Q+++ LS + LI DGTI GGM+PKI +++A++ GV S I+DG
Sbjct: 215 LLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274
Query: 121 KKPHSILMEIFTKNGSGTL 139
+ P+++L+EIFT +G GTL
Sbjct: 275 RVPNAVLLEIFTDSGVGTL 293
>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 282
Score = 123 bits (309), Expect = 7e-30
Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+G+VG V KVN IL LI++ IPVIAP+ G DG +YNINADT A IA+ L +L+
Sbjct: 139 IGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLI 198
Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
LTDV GVL + +LIS L+ +EA LI+DGT++GGMIPK+E ++ A+ GV +V I++G
Sbjct: 199 LLTDVDGVLK-DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIING 257
Query: 121 KKPHSILMEIFTKNGSGTL 139
H+IL+EIF++ G GT+
Sbjct: 258 GLEHAILLEIFSRKGIGTM 276
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 109 bits (274), Expect = 7e-26
Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFL 62
VG+V +VN + L+ +G IPV++ +AP DG +NINADT A A+AE L +LL L
Sbjct: 150 LVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLML 209
Query: 63 TDVPGVLDKN---RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119
TD+ G+ + L+S++ L+ T+ GM+PK+E ++A+ GV S I+D
Sbjct: 210 TDIDGLYTRWPDRDSLVSEIDTGTLAQLLP--TLELGMVPKVEACLRAVIGGVPSAHIID 267
Query: 120 GKKPHSILMEIFTKNGSGTLLI 141
G+ H +L+E+FT G+GT ++
Sbjct: 268 GRVTHCVLVELFTDAGTGTKVV 289
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 88.5 bits (218), Expect = 2e-19
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPI------APGYDGATYNINADTFAGAIAEKL 54
+ + ++ LIK+ II + G I+ D + +AE +
Sbjct: 160 VPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELV 219
Query: 55 NVIRLLFLTDVPGVLDKN----RQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIE 109
+ L+ LT V V + ++ +++ E + G G M+PKIE +I+ +E
Sbjct: 220 DADALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVE 279
Query: 110 NGVKSVAILDGKKPHSILMEIFTKNGSGTL 139
+ AI+ L + GT+
Sbjct: 280 SQPNKQAIITS---LENLGSMSGDEIVGTV 306
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
[TaxId: 562]}
Length = 258
Score = 82.5 bits (202), Expect = 1e-17
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 18 LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLIS 77
L+++G +PV++ I +G N+NAD L+ L+DV G+LD Q I+
Sbjct: 136 LLENGYLPVVSSIGVTDEGQLMNVNADQA-ATALAATLGADLILLSDVSGILDGKGQRIA 194
Query: 78 KLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSG 137
+++ +A LI+ G I+ GMI K+ ++ A + V I + + +F G
Sbjct: 195 EMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLP-ALFNGMPMG 253
Query: 138 TLLI 141
T ++
Sbjct: 254 TRIL 257
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 78.4 bits (192), Expect = 2e-16
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
+ K+ + ++ G + G I+ D +AE++N +
Sbjct: 172 HVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFM 231
Query: 61 FLTDVPGVL----DKNRQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENGVKSV 115
LTDV G + Q + ++ + E R ++G +G M PK+ +I+ IE G +
Sbjct: 232 ILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERA 291
Query: 116 AILDGKKPHSILMEIFTKNGSGTLLIP 142
I +K L + +GT ++P
Sbjct: 292 IIAHLEKAVEAL-----EGKTGTQVLP 313
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni
[TaxId: 197]}
Length = 250
Score = 43.1 bits (100), Expect = 9e-06
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 19 IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78
I GI+P+I + D+ + + L+ L+D+ G DKN S
Sbjct: 117 INLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSD 176
Query: 79 LSINEARTLIKDGTI-----------SGGMIPKIETSIKAIENGVKSVAILDGKKPHSIL 127
E T IK+ + +GG++ K++ + +E+ K + + G
Sbjct: 177 AKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKK-MFLASGFDLSVAK 235
Query: 128 MEIFT-KNGSGTL 139
+ K GTL
Sbjct: 236 TFLLEDKQIGGTL 248
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 31.0 bits (69), Expect = 0.039
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 43 ADTFAGAIAEKLNVIRLLFLTDVPGVLDKN------RQLISKLSINEARTLIKDGTIS-- 94
D A +AE + + T+V GV + +LS + ++ +
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175
Query: 95 GGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139
++ + + + +K ++ G + +M+ GT+
Sbjct: 176 TNVVIDLLAAKIIERSKIK-TYVILGTPEN--IMKAVKGEAVGTV 217
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.0 bits (59), Expect = 0.57
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 92 TISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILME 129
IS G +P +E ++ A+ S A+ + M
Sbjct: 20 AISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMG 57
>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus
influenzae, HI1679 [TaxId: 727]}
Length = 177
Score = 24.3 bits (52), Expect = 4.5
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 53 KLNVIRLLFLTDVPGVLDKNRQLISK 78
KL I+ + DV GVL +
Sbjct: 1 KLENIKFVIT-DVDGVLTDGQLHYDA 25
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 244
Score = 24.3 bits (51), Expect = 4.7
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDG---TISGGMIPKI 101
R+L L DV G L RQ I + L + G KI
Sbjct: 1 RVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKI 47
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 24.0 bits (51), Expect = 4.8
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 20 KSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKL----------NVIRLLFLTDVPGVL 69
K IPV A GY G + + + + I +L ++ G
Sbjct: 162 KEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDA 221
Query: 70 DKNRQLISKLSIN 82
+ +++ K+ +
Sbjct: 222 WEMDRVLEKIGYH 234
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA,
alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Length = 104
Score = 23.7 bits (51), Expect = 5.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 97 MIPKIETSIKAIENG 111
+I KIE ++K +E+
Sbjct: 89 LIKKIEKTLKKVEDE 103
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 23.5 bits (49), Expect = 7.5
Identities = 8/71 (11%), Positives = 24/71 (33%)
Query: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117
++L + + D +L ++ + L+ G I + E + + +
Sbjct: 4 KVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKV 63
Query: 118 LDGKKPHSILM 128
+ + + I
Sbjct: 64 IHENEHYIIET 74
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 23.6 bits (50), Expect = 7.6
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 16 DLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKL 54
+++ K+G+ P+ PG DG ++ A A+A ++
Sbjct: 6 EVMKKAGV-----PVVPGSDGVLKSLEE---AKALAREI 36
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 23.4 bits (50), Expect = 8.2
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 96 GMIPKIETSIKAIENGVKSVAIL--DG------KKPHSILMEIFTK 133
G I +IE +++A++ G +V + K+ S L K
Sbjct: 14 GRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKK 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.388
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,415
Number of extensions: 23173
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 25
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)