RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.394_1 (142 letters) >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} Length = 300 Score = 133 bits (335), Expect = 7e-33 Identities = 67/139 (48%), Positives = 98/139 (70%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 +G VG V VN +L++L+K IPVIAPI G +G +YNINAD AG +AE L +L+ Sbjct: 155 IGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLM 214 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 LT++ G++DK Q+++ LS + LI DGTI GGM+PKI +++A++ GV S I+DG Sbjct: 215 LLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274 Query: 121 KKPHSILMEIFTKNGSGTL 139 + P+++L+EIFT +G GTL Sbjct: 275 RVPNAVLLEIFTDSGVGTL 293 >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Length = 282 Score = 123 bits (309), Expect = 7e-30 Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 +G+VG V KVN IL LI++ IPVIAP+ G DG +YNINADT A IA+ L +L+ Sbjct: 139 IGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLI 198 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 LTDV GVL + +LIS L+ +EA LI+DGT++GGMIPK+E ++ A+ GV +V I++G Sbjct: 199 LLTDVDGVLK-DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIING 257 Query: 121 KKPHSILMEIFTKNGSGTL 139 H+IL+EIF++ G GT+ Sbjct: 258 GLEHAILLEIFSRKGIGTM 276 >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 Score = 109 bits (274), Expect = 7e-26 Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 5/142 (3%) Query: 3 FVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFL 62 VG+V +VN + L+ +G IPV++ +AP DG +NINADT A A+AE L +LL L Sbjct: 150 LVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLML 209 Query: 63 TDVPGVLDKN---RQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119 TD+ G+ + L+S++ L+ T+ GM+PK+E ++A+ GV S I+D Sbjct: 210 TDIDGLYTRWPDRDSLVSEIDTGTLAQLLP--TLELGMVPKVEACLRAVIGGVPSAHIID 267 Query: 120 GKKPHSILMEIFTKNGSGTLLI 141 G+ H +L+E+FT G+GT ++ Sbjct: 268 GRVTHCVLVELFTDAGTGTKVV 289 >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Length = 307 Score = 88.5 bits (218), Expect = 2e-19 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 14/150 (9%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPI------APGYDGATYNINADTFAGAIAEKL 54 + + ++ LIK+ II + G I+ D + +AE + Sbjct: 160 VPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELV 219 Query: 55 NVIRLLFLTDVPGVLDKN----RQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIE 109 + L+ LT V V + ++ +++ E + G G M+PKIE +I+ +E Sbjct: 220 DADALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVE 279 Query: 110 NGVKSVAILDGKKPHSILMEIFTKNGSGTL 139 + AI+ L + GT+ Sbjct: 280 SQPNKQAIITS---LENLGSMSGDEIVGTV 306 >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Length = 258 Score = 82.5 bits (202), Expect = 1e-17 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 18 LIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLIS 77 L+++G +PV++ I +G N+NAD L+ L+DV G+LD Q I+ Sbjct: 136 LLENGYLPVVSSIGVTDEGQLMNVNADQA-ATALAATLGADLILLSDVSGILDGKGQRIA 194 Query: 78 KLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSG 137 +++ +A LI+ G I+ GMI K+ ++ A + V I + + +F G Sbjct: 195 EMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLP-ALFNGMPMG 253 Query: 138 TLLI 141 T ++ Sbjct: 254 TRIL 257 >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 313 Score = 78.4 bits (192), Expect = 2e-16 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 + K+ + ++ G + G I+ D +AE++N + Sbjct: 172 HVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFM 231 Query: 61 FLTDVPGVL----DKNRQLISKLSINEARTLIKDGT-ISGGMIPKIETSIKAIENGVKSV 115 LTDV G + Q + ++ + E R ++G +G M PK+ +I+ IE G + Sbjct: 232 ILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERA 291 Query: 116 AILDGKKPHSILMEIFTKNGSGTLLIP 142 I +K L + +GT ++P Sbjct: 292 IIAHLEKAVEAL-----EGKTGTQVLP 313 >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 Score = 43.1 bits (100), Expect = 9e-06 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 19 IKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISK 78 I GI+P+I + D+ + + L+ L+D+ G DKN S Sbjct: 117 INLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSD 176 Query: 79 LSINEARTLIKDGTI-----------SGGMIPKIETSIKAIENGVKSVAILDGKKPHSIL 127 E T IK+ + +GG++ K++ + +E+ K + + G Sbjct: 177 AKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKK-MFLASGFDLSVAK 235 Query: 128 MEIFT-KNGSGTL 139 + K GTL Sbjct: 236 TFLLEDKQIGGTL 248 >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 Score = 31.0 bits (69), Expect = 0.039 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 11/105 (10%) Query: 43 ADTFAGAIAEKLNVIRLLFLTDVPGVLDKN------RQLISKLSINEARTLIKDGTIS-- 94 D A +AE + + T+V GV + +LS + ++ + Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175 Query: 95 GGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTL 139 ++ + + + +K ++ G + +M+ GT+ Sbjct: 176 TNVVIDLLAAKIIERSKIK-TYVILGTPEN--IMKAVKGEAVGTV 217 >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Score = 27.0 bits (59), Expect = 0.57 Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 92 TISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILME 129 IS G +P +E ++ A+ S A+ + M Sbjct: 20 AISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMG 57 >d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]} Length = 177 Score = 24.3 bits (52), Expect = 4.5 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%) Query: 53 KLNVIRLLFLTDVPGVLDKNRQLISK 78 KL I+ + DV GVL + Sbjct: 1 KLENIKFVIT-DVDGVLTDGQLHYDA 25 >d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 244 Score = 24.3 bits (51), Expect = 4.7 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 3/47 (6%) Query: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDG---TISGGMIPKI 101 R+L L DV G L RQ I + L + G KI Sbjct: 1 RVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKI 47 >d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]} Length = 525 Score = 24.0 bits (51), Expect = 4.8 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 10/73 (13%) Query: 20 KSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKL----------NVIRLLFLTDVPGVL 69 K IPV A GY G + + + + I +L ++ G Sbjct: 162 KEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDA 221 Query: 70 DKNRQLISKLSIN 82 + +++ K+ + Sbjct: 222 WEMDRVLEKIGYH 234 >d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]} Length = 104 Score = 23.7 bits (51), Expect = 5.9 Identities = 6/15 (40%), Positives = 11/15 (73%) Query: 97 MIPKIETSIKAIENG 111 +I KIE ++K +E+ Sbjct: 89 LIKKIEKTLKKVEDE 103 >d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Length = 257 Score = 23.5 bits (49), Expect = 7.5 Identities = 8/71 (11%), Positives = 24/71 (33%) Query: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAI 117 ++L + + D +L ++ + L+ G I + E + + + Sbjct: 4 KVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKV 63 Query: 118 LDGKKPHSILM 128 + + + I Sbjct: 64 IHENEHYIIET 74 >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 Score = 23.6 bits (50), Expect = 7.6 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Query: 16 DLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKL 54 +++ K+G+ P+ PG DG ++ A A+A ++ Sbjct: 6 EVMKKAGV-----PVVPGSDGVLKSLEE---AKALAREI 36 >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Score = 23.4 bits (50), Expect = 8.2 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Query: 96 GMIPKIETSIKAIENGVKSVAIL--DG------KKPHSILMEIFTK 133 G I +IE +++A++ G +V + K+ S L K Sbjct: 14 GRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKK 59 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.141 0.388 Gapped Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 509,415 Number of extensions: 23173 Number of successful extensions: 101 Number of sequences better than 10.0: 1 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 25 Length of query: 142 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 65 Effective length of database: 1,350,386 Effective search space: 87775090 Effective search space used: 87775090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)