BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.394_1
         (142 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.394_1 
          Length = 142

 Score =  276 bits (705), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60
           LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL
Sbjct: 1   LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60

Query: 61  FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120
           FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG
Sbjct: 61  FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120

Query: 121 KKPHSILMEIFTKNGSGTLLIP 142
           KKPHSILMEIFTKNGSGTLLIP
Sbjct: 121 KKPHSILMEIFTKNGSGTLLIP 142


>gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 271

 Score = 30.0 bits (66), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 58  RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISG-------GMIPKIETSIKAIEN 110
           RL+FL     +LDK + ++S ++ N A TLIKD   S        G +P I+ +    ++
Sbjct: 63  RLMFL--FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120

Query: 111 GVKSV 115
           G+ S+
Sbjct: 121 GLISI 125


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 606

 Score = 23.1 bits (48), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 60  LFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119
           L L D PG +D   ++   LS  E   L+ D T  G     +    +AI+N  + + +L+
Sbjct: 80  LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDAT-QGVEAQTLANVYQAIDNNHEIITVLN 138


>gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 281

 Score = 22.7 bits (47), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 23/106 (21%)

Query: 38  TYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGM 97
            YNI     AGAI  + NV  L F         K+   ISK+             +SGG 
Sbjct: 63  QYNIGRIVVAGAIDRRPNVQDLCFSI-------KDSLRISKMIWQ---------LVSGGN 106

Query: 98  IPKIETSIKAIEN-GVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142
              ++ SI  +E+ GV  V        H I+ E+  + GS    +P
Sbjct: 107 AAILKASIDLLESYGVSVVG------AHEIVPELLVQVGSLGTCVP 146


>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 600

 Score = 21.6 bits (44), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 60  LFLTDVPGVLDKNRQLISKLSINEARTLI-----KDGTISGGMIPKIETSIKAIENGVKS 114
           L LTD     DK  + I +   N  + +I      DG  S  ++ +  +      N    
Sbjct: 73  LILTDC----DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128

Query: 115 VAILDGKKPHSILMEIFTKNGSGTLL 140
             I+DG  P+  LME F   G+  ++
Sbjct: 129 DRIVDGYGPNPSLMEKFINEGAQLII 154


>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 529

 Score = 21.2 bits (43), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 90  DGTISGGMIPKIETSIKAIENGVKSVAI-----LDGKKPHSILMEIFTKNGSGTLL 140
           D  I  G + KIE      E G++ + I       G   + I++E    +GSGTLL
Sbjct: 65  DAIIWKGTLNKIEF---LPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLL 117


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 21.2 bits (43), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140
           +EN +  ++I  G K  + + + F K G   +L
Sbjct: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.141    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,299
Number of Sequences: 1233
Number of extensions: 3673
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 142
length of database: 328,796
effective HSP length: 66
effective length of query: 76
effective length of database: 247,418
effective search space: 18803768
effective search space used: 18803768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)