BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.394_1 (142 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.394_1 Length = 142 Score = 276 bits (705), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL Sbjct: 1 LGFVGNVIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLL 60 Query: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG Sbjct: 61 FLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDG 120 Query: 121 KKPHSILMEIFTKNGSGTLLIP 142 KKPHSILMEIFTKNGSGTLLIP Sbjct: 121 KKPHSILMEIFTKNGSGTLLIP 142 >gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 30.0 bits (66), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%) Query: 58 RLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISG-------GMIPKIETSIKAIEN 110 RL+FL +LDK + ++S ++ N A TLIKD S G +P I+ + ++ Sbjct: 63 RLMFL--FSDILDKYQPVLSVIACNTAFTLIKDELRSTFPSMAFLGAVPAIKQAAAYTQS 120 Query: 111 GVKSV 115 G+ S+ Sbjct: 121 GLISI 125 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 23.1 bits (48), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 60 LFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILD 119 L L D PG +D ++ LS E L+ D T G + +AI+N + + +L+ Sbjct: 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDAT-QGVEAQTLANVYQAIDNNHEIITVLN 138 >gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 22.7 bits (47), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 23/106 (21%) Query: 38 TYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTLIKDGTISGGM 97 YNI AGAI + NV L F K+ ISK+ +SGG Sbjct: 63 QYNIGRIVVAGAIDRRPNVQDLCFSI-------KDSLRISKMIWQ---------LVSGGN 106 Query: 98 IPKIETSIKAIEN-GVKSVAILDGKKPHSILMEIFTKNGSGTLLIP 142 ++ SI +E+ GV V H I+ E+ + GS +P Sbjct: 107 AAILKASIDLLESYGVSVVG------AHEIVPELLVQVGSLGTCVP 146 >gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 600 Score = 21.6 bits (44), Expect = 5.8, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Query: 60 LFLTDVPGVLDKNRQLISKLSINEARTLI-----KDGTISGGMIPKIETSIKAIENGVKS 114 L LTD DK + I + N + +I DG S ++ + + N Sbjct: 73 LILTDC----DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 Query: 115 VAILDGKKPHSILMEIFTKNGSGTLL 140 I+DG P+ LME F G+ ++ Sbjct: 129 DRIVDGYGPNPSLMEKFINEGAQLII 154 >gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 529 Score = 21.2 bits (43), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Query: 90 DGTISGGMIPKIETSIKAIENGVKSVAI-----LDGKKPHSILMEIFTKNGSGTLL 140 D I G + KIE E G++ + I G + I++E +GSGTLL Sbjct: 65 DAIIWKGTLNKIEF---LPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLL 117 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 21.2 bits (43), Expect = 8.4, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 108 IENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 +EN + ++I G K + + + F K G +L Sbjct: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.141 0.388 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,299 Number of Sequences: 1233 Number of extensions: 3673 Number of successful extensions: 13 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 9 length of query: 142 length of database: 328,796 effective HSP length: 66 effective length of query: 76 effective length of database: 247,418 effective search space: 18803768 effective search space used: 18803768 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 34 (17.7 bits)