HHsearch alignment for GI: peg_409 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=92.53 E-value=0.11 Score=31.51 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88973235094899998276--88879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 11 SETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 11 ~~~~~~~~~~~~qq~~a~~~--~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
T Consensus 80 eELv~llG~--~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~-~La~q~ 154 (451)
T COG0541 80 EELVKLLGG--ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK-QLAEQV 154 (451)
T ss_pred HHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHC
T ss_conf 999998488--876650378998589998156797486899999999974994589850567868999999-999860