HHsearch alignment for GI: peg_409 and conserved domain: COG0556

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].

Probab=93.34  E-value=0.05  Score=34.00  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=39.3

Q ss_pred             HHCCCHHHHHHHC-------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3509489999827-------688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4   17 ISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW   89 (242)
Q Consensus        17 ~~~~~~qq~~a~~-------~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~   89 (242)
T Consensus        11 f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~-~rP-----tLV~AhNKTLAaQLy~Efk~fFP~N   84 (663)
T COG0556          11 FKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV-QRP-----TLVLAHNKTLAAQLYSEFKEFFPEN   84 (663)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH-CCC-----EEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             8999986799999998886386025886203688310799999986-897-----1998255547999999999768676


Q ss_pred             HC
Q ss_conf             21
Q 537021.9.peg.4   90 SH   91 (242)
Q Consensus        90 ~~   91 (242)
T Consensus        85 aV   86 (663)
T COG0556          85 AV   86 (663)
T ss_pred             CE
T ss_conf             45