HHsearch alignment for GI: peg_409 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=95.72 E-value=0.017 Score=37.24 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=43.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~------~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRS------TLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC------EEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 7867999679998899999999982698------899978299999999999973488