HHsearch alignment for GI: peg_409 and conserved domain: COG1074

>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].
Probab=99.96  E-value=6.4e-29  Score=223.16  Aligned_cols=178  Identities=33%  Similarity=0.422  Sum_probs=143.2

Q ss_pred             HCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             50948999982768887998488899679999999999824--789889566776878999999999999677521674-
Q 537021.9.peg.4   18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD-   94 (242)
Q Consensus        18 ~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~--g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~-   94 (242)
T Consensus         3 ~~~~~~~~~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~~~~   82 (1139)
T COG1074           3 DSTEALQPLASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQENDE   82 (1139)
T ss_pred             CCHHHHCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42544255535866668999668898421699999999972589985572344063888999999999999999870001


Q ss_pred             -CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             -2214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4   95 -EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK  173 (242)
Q Consensus        95 -~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~  173 (242)
T Consensus        83 ~~~~~~~l~~--~~~~~~~~~~~a~~~f~~a~~~~~~~~I~Tih~Fc~~~L~~~~~~~~~~~~fe~~~d~--~~l~~e~~  158 (1139)
T COG1074          83 KLASDDELLE--ALAALIQALIQAIRLFALALETNDEAAIFTIHGFCQRILRQFALEAGISFDFELLEDE--SDLFLELV  158 (1139)
T ss_pred             HCCCCCHHHH--HHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCH--HHHHHHHH
T ss_conf             0001026788--7541431189999999999847785346413889999999847751776542000266--89999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             99999843278035999999999416
Q 537021.9.peg.4  174 KSTLASIMLDNNEELKKAFYEILEIS  199 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~~  199 (242)
T Consensus       159 ~d~~r~~~~~~~~~~~~~v~~~~~~~  184 (1139)
T COG1074         159 EDFWRRRFYPLPAELAQLVAQLYKFP  184 (1139)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             99998630468689999999986104