HHsearch alignment for GI: peg_409 and conserved domain: COG1074
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].
Probab=99.96 E-value=6.4e-29 Score=223.16 Aligned_cols=178 Identities=33% Similarity=0.422 Sum_probs=143.2
Q ss_pred HCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 50948999982768887998488899679999999999824--789889566776878999999999999677521674-
Q 537021.9.peg.4 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD- 94 (242)
Q Consensus 18 ~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~--g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~- 94 (242)
T Consensus 3 ~~~~~~~~~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~~~~ 82 (1139)
T COG1074 3 DSTEALQPLASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQENDE 82 (1139)
T ss_pred CCHHHHCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42544255535866668999668898421699999999972589985572344063888999999999999999870001
Q ss_pred -CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -2214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4 95 -EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 (242)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~ 173 (242)
T Consensus 83 ~~~~~~~l~~--~~~~~~~~~~~a~~~f~~a~~~~~~~~I~Tih~Fc~~~L~~~~~~~~~~~~fe~~~d~--~~l~~e~~ 158 (1139)
T COG1074 83 KLASDDELLE--ALAALIQALIQAIRLFALALETNDEAAIFTIHGFCQRILRQFALEAGISFDFELLEDE--SDLFLELV 158 (1139)
T ss_pred HCCCCCHHHH--HHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCH--HHHHHHHH
T ss_conf 0001026788--7541431189999999999847785346413889999999847751776542000266--89999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999843278035999999999416
Q 537021.9.peg.4 174 KSTLASIMLDNNEELKKAFYEILEIS 199 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (242)
T Consensus 159 ~d~~r~~~~~~~~~~~~~v~~~~~~~ 184 (1139)
T COG1074 159 EDFWRRRFYPLPAELAQLVAQLYKFP 184 (1139)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99998630468689999999986104