HHsearch alignment for GI: peg_409 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.70 E-value=0.011 Score=38.65 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=49.3
Q ss_pred CCCHHHHHHHCC-------CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 094899998276-------8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 19 QTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 19 ~~~~qq~~a~~~-------~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFGA 271 (730)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 038899999999997505666536767778858999999999999759---87999956534569999999998678