HHsearch alignment for GI: peg_409 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.70  E-value=0.011  Score=38.65  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHCC-------CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             094899998276-------8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4   19 QTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA   88 (242)
Q Consensus        19 ~~~~qq~~a~~~-------~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~   88 (242)
T Consensus       198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg~  271 (730)
T COG1198         198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFGA  271 (730)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             038899999999997505666536767778858999999999999759---87999956534569999999998678