HHsearch alignment for GI: peg_409 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=90.65 E-value=0.3 Score=28.50 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.4
Q ss_pred HCCCHHHHHHH----CCCCC----EEEEECCCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
Q ss_conf 50948999982----76888----79984888996799999999998247-----89889566776878
Q 537021.9.peg.4 18 SQTKSEQLLAS----DPTRS----AWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHTKA 73 (242)
Q Consensus 18 ~~~~~qq~~a~----~~~~~----~lV~A~aGSGKT~tL~~rv~~ll~~g-----~~P~~IL~lTFT~k 73 (242)
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 767899999999986644866667875267677789999999999987288168866379999999999