HHsearch alignment for GI: peg_409 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=90.65  E-value=0.3  Score=28.50  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             HCCCHHHHHHH----CCCCC----EEEEECCCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
Q ss_conf             50948999982----76888----79984888996799999999998247-----89889566776878
Q 537021.9.peg.4   18 SQTKSEQLLAS----DPTRS----AWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHTKA   73 (242)
Q Consensus        18 ~~~~~qq~~a~----~~~~~----~lV~A~aGSGKT~tL~~rv~~ll~~g-----~~P~~IL~lTFT~k   73 (242)
T Consensus       262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~  330 (677)
T COG1200         262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES  330 (677)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf             767899999999986644866667875267677789999999999987288168866379999999999