HHsearch alignment for GI: peg_409 and conserved domain: COG1201

>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=97.09  E-value=0.0011  Score=45.66  Aligned_cols=134  Identities=18%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHH-HCC-CCH---HHHHHHHHHHHHHHH
Q ss_conf             07888889732350948999982---7688879984888996799999999998-247-898---895667768789999
Q 537021.9.peg.4    6 SFQEHSETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLL-LAN-AHP---STLLCLTHTKAAAAE   77 (242)
Q Consensus         6 ~~~~~~~~~~~~~~~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g-~~P---~~IL~lTFT~kAA~E   77 (242)
T Consensus        11 ~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D   88 (814)
T COG1201          11 RVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND   88 (814)
T ss_pred             HHHHHHHHH--CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf             999999985--089987899999998589846998689997379999999999986068888885699995707888789


Q ss_pred             HHHHHHHHHHHHHCC---CCCCCHHHHHHHHCCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999996775216---74221464997314799-9-------7899999999999983100132111799998
Q 537021.9.peg.4   78 MSHRVLEIITAWSHL---SDEILSAEITKIQGKKP-N-------KSDMSKARHLLITILETPGGLKVQTIHAFCE  141 (242)
Q Consensus        78 l~~RI~~~l~~~~~~---~~~~~~~~l~~~~~~~~-~-------~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~  141 (242)
T Consensus        89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~  163 (814)
T COG1201          89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE  163 (814)
T ss_pred             HHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHC
T ss_conf             999999999975984444228788677630469999689958348999836888999860780999512545434