HHsearch alignment for GI: peg_409 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=97.09 E-value=0.0011 Score=45.66 Aligned_cols=134 Identities=18% Similarity=0.133 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHH-HCC-CCH---HHHHHHHHHHHHHHH
Q ss_conf 07888889732350948999982---7688879984888996799999999998-247-898---895667768789999
Q 537021.9.peg.4 6 SFQEHSETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLL-LAN-AHP---STLLCLTHTKAAAAE 77 (242)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g-~~P---~~IL~lTFT~kAA~E 77 (242)
T Consensus 11 ~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 11 RVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 999999985--089987899999998589846998689997379999999999986068888885699995707888789
Q ss_pred HHHHHHHHHHHHHCC---CCCCCHHHHHHHHCCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999996775216---74221464997314799-9-------7899999999999983100132111799998
Q 537021.9.peg.4 78 MSHRVLEIITAWSHL---SDEILSAEITKIQGKKP-N-------KSDMSKARHLLITILETPGGLKVQTIHAFCE 141 (242)
Q Consensus 78 l~~RI~~~l~~~~~~---~~~~~~~~l~~~~~~~~-~-------~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~ 141 (242)
T Consensus 89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHC
T ss_conf 999999999975984444228788677630469999689958348999836888999860780999512545434