HHsearch alignment for GI: peg_409 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=92.56 E-value=0.066 Score=33.15 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HCCCCCCC
Q ss_conf 827688879984888996799999999998247898895667768789999999999--------996775-21674221
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL--------EIITAW-SHLSDEIL 97 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~--------~~l~~~-~~~~~~~~ 97 (242)
T Consensus 181 GI~PPKGVLLYGPPGTGKTL-LAkAVA~~T----------~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIF 249 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTL-LAKAVANQT----------DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIF 249 (406)
T ss_pred CCCCCCCEEEECCCCCCHHH-HHHHHHHCC----------CCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999712766899975889-999987205----------8669994219999998341169999999987414984999
Q ss_pred HHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46499731479997--899999999999983100132
Q 537021.9.peg.4 98 SAEITKIQGKKPNK--SDMSKARHLLITILETPGGLK 132 (242)
Q Consensus 98 ~~~l~~~~~~~~~~--~~~~~~~~ll~~~l~~~~~~~ 132 (242)
T Consensus 250 iDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 250 IDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred EECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8311223111136888850999999999998605889