HHsearch alignment for GI: peg_409 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=93.59 E-value=0.17 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
T Consensus 47 ~l~SmIl~GPPG~GKTTlA-~liA~--~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLA-RLIAG--TTNAAFEALSAVTSGVKDLREIIEEARKNRL 101 (436)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHH--HHCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9860577789998888999-99987--6177669951523467999999999999872