HHsearch alignment for GI: peg_409 and conserved domain: COG5008

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=92.21  E-value=0.12  Score=31.26  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=28.1

Q ss_pred             HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             9999827688879984888996799999999998
Q 537021.9.peg.4   23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL   56 (242)
Q Consensus        23 qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll   56 (242)
T Consensus       119 lk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN  152 (375)
T COG5008         119 LKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRN  152 (375)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCC
T ss_conf             9975204374599987788884016899860134