HHsearch alignment for GI: peg_409 and conserved domain: KOG0338
>KOG0338 consensus.
Probab=95.56 E-value=0.017 Score=37.29 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=55.2
Q ss_pred CCHHHHHH---------HHHHHHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHH--CCCCHHHHHHHH
Q ss_conf 10078888---------89732350948999982--7688879984888996799999999-9982--478988956677
Q 537021.9.peg.4 4 HNSFQEHS---------ETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLL--ANAHPSTLLCLT 69 (242)
Q Consensus 4 ~~~~~~~~---------~~~~~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~--~g~~P~~IL~lT 69 (242)
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHCCCHHHHCCHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 65488600246999988743878887403310127752222564011468711456788999985273567612699983
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 687899999999999967752167
Q 537021.9.peg.4 70 HTKAAAAEMSHRVLEIITAWSHLS 93 (242)
Q Consensus 70 FT~kAA~El~~RI~~~l~~~~~~~ 93 (242)
T Consensus 260 PTR----ELaiQv~sV~~qlaqFt 279 (691)
T KOG0338 260 PTR----ELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCH----HHHHHHHHHHHHHHHHC
T ss_conf 508----99999999999987660