HHsearch alignment for GI: peg_409 and conserved domain: KOG0340
>KOG0340 consensus.
Probab=90.15 E-value=0.41 Score=27.57 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88897323509489999827--688879984888996799999999998247898895--66776878999999999999
Q 537021.9.peg.4 10 HSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL--LCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 10 ~~~~~~~~~~~~~qq~~a~~--~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~I--L~lTFT~kAA~El~~RI~~~ 85 (242)
T Consensus 21 ~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse--dP~giFalvlTPTr----ELA~QiaEQ 94 (442)
T KOG0340 21 QLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE--DPYGIFALVLTPTR----ELALQIAEQ 94 (442)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCEEEEECCHH----HHHHHHHHH
T ss_conf 999835889982676524878546631031346887411222787776133--88760699954528----888888899
Q ss_pred HHH
Q ss_conf 677
Q 537021.9.peg.4 86 ITA 88 (242)
Q Consensus 86 l~~ 88 (242)
T Consensus 95 F~a 97 (442)
T KOG0340 95 FIA 97 (442)
T ss_pred HHH
T ss_conf 998