HHsearch alignment for GI: peg_409 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.95 E-value=0.02 Score=36.75 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 350948999982--7688879984888996799999999-9982478988------956677687899999999999
Q 537021.9.peg.4 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPS------TLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 17 ~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g~~P~------~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 105 ~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~ 181 (472)
T PRK01297 105 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 181 (472)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999999769988998999867999999999999971775101136895299987999999999999999