HHsearch alignment for GI: peg_409 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=94.21 E-value=0.03 Score=35.53 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
T Consensus 40 ~k~lLL~GPpGvGKTT~a-~~lAk~ 63 (403)
T PRK04195 40 KKALLLYGPPGVGKTSLA-HALAND 63 (403)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHH
T ss_conf 746998893998799999-999998