HHsearch alignment for GI: peg_409 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.75  E-value=0.0071  Score=39.96  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=26.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Q ss_conf             8887998488899679999999999824-78988956677687899
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA   75 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA   75 (242)
T Consensus        24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~G---E~~lyitl~E~~~   66 (501)
T PRK09302         24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFG---EPGVFVTFEESPE   66 (501)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCHH
T ss_conf             977999838999999999999999988559---9789998579999