HHsearch alignment for GI: peg_409 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.75 E-value=0.0071 Score=39.96 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824-78988956677687899
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA 75 (242)
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~G---E~~lyitl~E~~~ 66 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFG---EPGVFVTFEESPE 66 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCHH
T ss_conf 977999838999999999999999988559---9789998579999