HHsearch alignment for GI: peg_409 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.68 E-value=0.0059 Score=40.54 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478988956677687899
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA 75 (242)
T Consensus 266 GsstLi~Gp~GtGKTtla~qFl~~~a~~G---E~~l~~~FeE~~~ 307 (501)
T PRK09302 266 GSIILVSGATGTGKTLLVSKFAEAACRRG---ERCLLFAFEESRA 307 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECCHH
T ss_conf 94699988999888999999999998659---9089999967999