HHsearch alignment for GI: peg_409 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=92.26 E-value=0.2 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 8887998488899679999999999824
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
T Consensus 169 GQRgLIVAPPkaGKT~lLq~-IA~aI~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQN-IANSITT 195 (416)
T ss_pred CCCCEEECCCCCCHHHHHHH-HHHHHHH
T ss_conf 85003756998754799999-9999985