HHsearch alignment for GI: peg_409 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=92.64 E-value=0.15 Score=30.68 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=32.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247-------8988956677687899999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN-------AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g-------~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 91 Vvii~GeTGsGKTTQiPq~~le~-g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~ 148 (1295)
T PRK11131 91 VVIVAGETGSGKTTQLPKICLEL-GRGIKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1295)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 69997689998788999999962-79999989977965999999999999981999899