HHsearch alignment for GI: peg_409 and conserved domain: PRK11773
>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=100.00 E-value=6.4e-33 Score=251.25 Aligned_cols=127 Identities=32% Similarity=0.484 Sum_probs=111.4
Q ss_pred HHHHHHHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89732350948999982-76888799848889967999999999982-47898895667768789999999999996775
Q 537021.9.peg.4 12 ETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 12 ~~~~~~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
T Consensus 2 ~~~~~l~~LN~~Q~~AV~~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~~~ 81 (722)
T PRK11773 2 DVSYLLDSLNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLGTS 81 (722)
T ss_pred CHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87899782699999998099998799973871599999999999998299987882898458999999999999871777
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 21674221464997314799978999999999999831001321117999987555428975889998516837899999
Q 537021.9.peg.4 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 (242)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~ 169 (242)
T Consensus 82 --------------------------------------~~~~~i~TfHSfc~~iLr~~~~~~g~~~~f~I~d~~d~~~l~ 123 (722)
T PRK11773 82 --------------------------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLL 123 (722)
T ss_pred --------------------------------------CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHH
T ss_conf --------------------------------------788889729999999999969983989998787689999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 537021.9.peg.4 170 EEAKKST 176 (242)
Q Consensus 170 ~~~~~~~ 176 (242)
T Consensus 124 k~~~~~~ 130 (722)
T PRK11773 124 KRLIKAL 130 (722)
T ss_pred HHHHHHC
T ss_conf 9999976