HHsearch alignment for GI: peg_409 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=94.81 E-value=0.037 Score=34.96 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~---sVlF~t~-----~dLv~~L~~a 147 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR---SVIVVTV-----PDVMSRLHES 147 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEH-----HHHHHHHHHH
T ss_conf 8860899899998788999999999998799---6999889-----9999999999