HHsearch alignment for GI: peg_409 and conserved domain: PRK12608

>PRK12608 transcription termination factor Rho; Provisional.
Probab=93.83  E-value=0.087  Score=32.31  Aligned_cols=27  Identities=26%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             8887998488899679999999999824
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRVLRLLLA   58 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~   58 (242)
T Consensus       132 GQRgLIVAPPkaGKT~LLq~-IA~aI~~  158 (379)
T PRK12608        132 GQRGLIVAPPRAGKTILLQQ-IAQAVAA  158 (379)
T ss_pred             CCCCEEECCCCCCHHHHHHH-HHHHHHH
T ss_conf             74012745898657899999-9999985