HHsearch alignment for GI: peg_409 and conserved domain: TIGR00609
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=99.91 E-value=2.1e-23 Score=184.38 Aligned_cols=160 Identities=23% Similarity=0.289 Sum_probs=114.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------
Q ss_conf 888799848889967999999999982-47--------898895667768789999999999996775216742------
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL-AN--------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE------ 95 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g--------~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~------ 95 (242)
T Consensus 9 ~g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~~i~~a~~~~~~~Giakl 88 (1324)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRERIHEALRALKAKGIAKL 88 (1324)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 64068874176148999999999999851512202443461212111222788899889988889999999864573020
Q ss_pred -----------------CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -----------------214649973147999789999999999998310013211179999875554289758899985
Q 537021.9.peg.4 96 -----------------ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158 (242)
Q Consensus 96 -----------------~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~ 158 (242)
T Consensus 89 GddtlsdGiaay~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~A~~~~D~a~i~TIHgfC~~~L~~~~f~~~~~f~~~ 168 (1324)
T TIGR00609 89 GDDTLSDGIAAYCEEHEETSDELPELLLEAIQDEKVKQAISRLRLALATLDEAAIYTIHGFCQRMLEQYAFESDEIFEQE 168 (1324)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 32034566899874256688732468888734754889999999999875476644663343566775323203300021
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 1683789999999999999984327803599999
Q 537021.9.peg.4 159 IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 (242)
Q Consensus 159 i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 192 (242)
T Consensus 169 l~~--~~~~l~~~~~~df~r~~f~~~~~~~~~~~ 200 (1324)
T TIGR00609 169 LIE--DESLLLAEIVKDFWRRNFYNLPFDIAQIV 200 (1324)
T ss_pred CCC--CHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 035--87799999999999863046646899999