HHsearch alignment for GI: peg_409 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=93.99  E-value=0.087  Score=32.33  Aligned_cols=67  Identities=15%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             HCCCHHHHHHH----CCCC--C--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             50948999982----7688--8--799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4   18 SQTKSEQLLAS----DPTR--S--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT   87 (242)
Q Consensus        18 ~~~~~qq~~a~----~~~~--~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~   87 (242)
T Consensus       307 ~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~G---YQ~ALMAPTEiLA~QHy~~~~~~l~  381 (721)
T TIGR00643       307 ELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESG---YQVALMAPTEILAEQHYDSLRNLLA  381 (721)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             77677899999999861478753222110106638999999999998469---8099917768999999999999623