HHsearch alignment for GI: peg_409 and conserved domain: TIGR01073
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=5.3e-36 Score=272.94 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=135.8
Q ss_pred HHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf 350948999982-76888799848889967999999999982-4789889566776878999999999999677-52167
Q 537021.9.peg.4 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 (242)
Q Consensus 17 ~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~-~~~~~ 93 (242)
T Consensus 2 l~~LN~~Q~~AV~tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaqqe 81 (811)
T TIGR01073 2 LAGLNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQQE 81 (811)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01024899999730378410101378873105789999999722369850465532205316789999998524665457
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HCC--CCCCCCCCCCHHHH
Q ss_conf 42214649973147999789999999999998-310013211179999875554289----758--89998516837899
Q 537021.9.peg.4 94 DEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPL----EAN--ITSHFAIADEEQSK 166 (242)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l-~~~~~~~i~Ti~~f~~~ilr~~~~----~~g--l~~~f~i~d~~~~~ 166 (242)
T Consensus 82 fsqrwellGk-----------yeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~ 150 (811)
T TIGR01073 82 FSQRWELLGK-----------YEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQL 150 (811)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 7678887434-----------66789999988652142323038999999888888889876211454157611178889
Q ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-9999843278035999999999416967799999999984-89--999998662089998589
Q 537021.9.peg.4 167 KLIEEAKK-STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN-RT--ALKLIFFFFSYLWRRKII 234 (242)
Q Consensus 167 ~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~~~~~~~~~~~r~~~ 234 (242)
T Consensus 151 ~l~K~i~~~~~dlD~Kkf~Pr~i~~~IS~~KN~l~~--P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~L 220 (811)
T TIGR01073 151 SLMKDIVKKDKDLDPKKFEPRSILGTISNAKNELLS--PEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNAL 220 (811)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999744204777778850125546766514788--6899973068878889999999999998761478