HHsearch alignment for GI: peg_409 and conserved domain: TIGR01073

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00  E-value=5.3e-36  Score=272.94  Aligned_cols=205  Identities=20%  Similarity=0.259  Sum_probs=135.8

Q ss_pred             HHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf             350948999982-76888799848889967999999999982-4789889566776878999999999999677-52167
Q 537021.9.peg.4   17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHLS   93 (242)
Q Consensus        17 ~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~-~~~~~   93 (242)
T Consensus         2 l~~LN~~Q~~AV~tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaqqe   81 (811)
T TIGR01073         2 LAGLNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQQE   81 (811)
T ss_pred             CCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01024899999730378410101378873105789999999722369850465532205316789999998524665457


Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HCC--CCCCCCCCCCHHHH
Q ss_conf             42214649973147999789999999999998-310013211179999875554289----758--89998516837899
Q 537021.9.peg.4   94 DEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPL----EAN--ITSHFAIADEEQSK  166 (242)
Q Consensus        94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l-~~~~~~~i~Ti~~f~~~ilr~~~~----~~g--l~~~f~i~d~~~~~  166 (242)
T Consensus        82 fsqrwellGk-----------yeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~  150 (811)
T TIGR01073        82 FSQRWELLGK-----------YEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQL  150 (811)
T ss_pred             HHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             7678887434-----------66789999988652142323038999999888888889876211454157611178889


Q ss_pred             HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Q ss_conf             99999999-9999843278035999999999416967799999999984-89--999998662089998589
Q 537021.9.peg.4  167 KLIEEAKK-STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN-RT--ALKLIFFFFSYLWRRKII  234 (242)
Q Consensus       167 ~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~~~~~~~~~~~r~~~  234 (242)
T Consensus       151 ~l~K~i~~~~~dlD~Kkf~Pr~i~~~IS~~KN~l~~--P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~L  220 (811)
T TIGR01073       151 SLMKDIVKKDKDLDPKKFEPRSILGTISNAKNELLS--PEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNAL  220 (811)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999744204777778850125546766514788--6899973068878889999999999998761478