HHsearch alignment for GI: peg_409 and conserved domain: TIGR01075
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=99.98 E-value=5.6e-33 Score=251.70 Aligned_cols=182 Identities=26% Similarity=0.357 Sum_probs=132.6
Q ss_pred HHHCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23509489999827-6888799848889967999999999982-478988956677687899999999999967752167
Q 537021.9.peg.4 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 (242)
Q Consensus 16 ~~~~~~~qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~ 93 (242)
T Consensus 1 lLd~LN~~QreaVaap~~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~-- 78 (741)
T TIGR01075 1 LLDGLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSAR-- 78 (741)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 965566577887403422554873068885024788899887407899853563200347899999999998620114--
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 (242)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~ 173 (242)
T Consensus 79 --------------------------------~~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRli 126 (741)
T TIGR01075 79 --------------------------------HQLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLI 126 (741)
T ss_pred --------------------------------CEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHH
T ss_conf --------------------------------325553230577899999986675346861242364065799999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999984327803599999999941696779999999998---4-899999986620899985899
Q 537021.9.peg.4 174 KSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS---N-RTALKLIFFFFSYLWRRKIIE 235 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~---~-~~~~~~~~~~~~~~~~r~~~e 235 (242)
T Consensus 127 k~~n----~~e~~~pPrq~~W~IN~qKdeGlRp~~i~~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVD 188 (741)
T TIGR01075 127 KSLN----LDEKQFPPRQAMWYINNQKDEGLRPEHIEAFDNDPVERTWIKIYAEYQEACDRAGLVD 188 (741)
T ss_pred HHCC----CCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8638----7633367134420103665678883235776777689999999999875306377345