HHsearch alignment for GI: peg_409 and conserved domain: TIGR01075

>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=99.98  E-value=5.6e-33  Score=251.70  Aligned_cols=182  Identities=26%  Similarity=0.357  Sum_probs=132.6

Q ss_pred             HHHCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             23509489999827-6888799848889967999999999982-478988956677687899999999999967752167
Q 537021.9.peg.4   16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS   93 (242)
Q Consensus        16 ~~~~~~~qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~   93 (242)
T Consensus         1 lLd~LN~~QreaVaap~~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~--   78 (741)
T TIGR01075         1 LLDGLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSAR--   78 (741)
T ss_pred             CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf             965566577887403422554873068885024788899887407899853563200347899999999998620114--


Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             42214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4   94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK  173 (242)
Q Consensus        94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~  173 (242)
T Consensus        79 --------------------------------~~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRli  126 (741)
T TIGR01075        79 --------------------------------HQLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLI  126 (741)
T ss_pred             --------------------------------CEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHH
T ss_conf             --------------------------------325553230577899999986675346861242364065799999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999984327803599999999941696779999999998---4-899999986620899985899
Q 537021.9.peg.4  174 KSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS---N-RTALKLIFFFFSYLWRRKIIE  235 (242)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~---~-~~~~~~~~~~~~~~~~r~~~e  235 (242)
T Consensus       127 k~~n----~~e~~~pPrq~~W~IN~qKdeGlRp~~i~~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVD  188 (741)
T TIGR01075       127 KSLN----LDEKQFPPRQAMWYINNQKDEGLRPEHIEAFDNDPVERTWIKIYAEYQEACDRAGLVD  188 (741)
T ss_pred             HHCC----CCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             8638----7633367134420103665678883235776777689999999999875306377345