HHsearch alignment for GI: peg_409 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.61 E-value=6.3e-05 Score=54.40 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHC-C--CCCEEEEECCCCCHHHHHHHHHHHHHH-CCC-----C----HHHHHHHHHH
Q ss_conf 7888889732350--9489999827-6--888799848889967999999999982-478-----9----8895667768
Q 537021.9.peg.4 7 FQEHSETIDLISQ--TKSEQLLASD-P--TRSAWVSANAGSGKTHILVQRVLRLLL-ANA-----H----PSTLLCLTHT 71 (242)
Q Consensus 7 ~~~~~~~~~~~~~--~~~qq~~a~~-~--~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~-----~----P~~IL~lTFT 71 (242)
T Consensus 336 ~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPT 415 (769)
T TIGR01448 336 LQKHILEVEKKLRLKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPT 415 (769)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 99999986875067706889999999860948998577888616899999999987168775531245677648873774
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999999999
Q 537021.9.peg.4 72 KAAAAEMSHRV 82 (242)
Q Consensus 72 ~kAA~El~~RI 82 (242)
T Consensus 416 GrAAkRl~E~T 426 (769)
T TIGR01448 416 GRAAKRLAEVT 426 (769)
T ss_pred HHHHHHCCCCC
T ss_conf 37888511002