HHsearch alignment for GI: peg_409 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=90.31 E-value=0.16 Score=30.50 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88879984888996799999999998247-------89889566776878999999999999677521
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-------~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
T Consensus 84 nQVviiAGETGSGKTTQL-PKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVR 150 (1320)
T TIGR01967 84 NQVVIIAGETGSGKTTQL-PKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVR 150 (1320)
T ss_pred CCEEEEECCCCCCCCCCC-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 898999724487620232-1677754278765412471468899999999999838898861320366