HHsearch alignment for GI: peg_409 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.42 E-value=0.22 Score=29.53 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH----------CC-CCHHHHHHHHHHH
Q ss_conf 99848889967999999999982----------47-8988956677687
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLL----------AN-AHPSTLLCLTHTK 72 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~----------~g-~~P~~IL~lTFT~ 72 (242)
T Consensus 16 QiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~ 64 (223)
T TIGR02237 16 QIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDR 64 (223)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9875899867899999999998618958999628983289999986305