HHsearch alignment for GI: peg_409 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=90.42 E-value=0.24 Score=29.27 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
T Consensus 325 PqGMvLVTGPTGSGKTVSL-YTaLniL 350 (577)
T TIGR02538 325 PQGMVLVTGPTGSGKTVSL-YTALNIL 350 (577)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHCCC
T ss_conf 9972886266598416878-7631125